Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39370 128 / 3e-34 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein AT2G37380 54 / 7e-08 MAKR3 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein AT5G26230 43 / 0.0002 MAKR1 membrane-associated kinase regulator 1, unknown protein AT4G22190 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023461 [exp] 418 / 8e-147 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10003309 [exp] 166 / 3e-48 AT2G39370 175 / 2e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10030311 [exp] 163 / 5e-47 AT2G39370 181 / 4e-54 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10024441 [exp] 44 / 0.0002 AT2G37380 87 / 8e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048300 [exp] 184 / 7e-55 AT2G39370 175 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G212800 [exp] 179 / 2e-52 AT2G39370 176 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.016G080800 [exp] 117 / 1e-29 AT2G39370 157 / 9e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.006G214700 [exp] 96 / 7e-22 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G090500 [exp] 48 / 4e-06 AT5G26230 150 / 5e-42 membrane-associated kinase regulator 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040336 pacid=23173899 polypeptide=Lus10040336 locus=Lus10040336.g ID=Lus10040336.BGIv1.0 annot-version=v1.0 ATGGCTGCAAATCTGCTGCAATCACATGATCATCACCATTCAGATGATGATGATGACTTCATTGACATGGAAATCACCTCATACTCCTCCACAAGCAATT ACCTTCTCCAAACCATGAACTCAAACTCAAGAGAGTTTGAGTTCCAAAAAATGTCTTCAACATCTCTAGACCAGAAGGACCACTCAACTTCACCAGCTGA TGAGCTCTTCTACAATGGAAAGCTCCTCCCTCTCCACCTCCCACCGCGTTTCCAGATGGTCGATAAGATCCTCCGAAACTCCTCAAGTTTCTACTCTTCT TCTGCCAATACCACTCCCTATGATGGTGATGATTGCAGAAATAAAGATGTGTTCTTTGATCAAGAATTCTACAGCACACCGCTAATGACAACAACTACTC CTACCCCTTATGATTCCTGCAACATATCTCCATTTGATTCCTGCCCCGTTAGCCGGGAGCTTAACCCTGAGGAGTACTTAGCTGAGTATTCATCATCTGA GGTGAATTCTGGCTACCTACACAATCCAAAGAGATCATCATCATGGGCCAAGAAGCTCAAGCTGATGAAAAGTTCCGGTCTTAGTTCGAAACTCAAGGCT CCTAGAGCTTACCTGAAGGCCTTGTTTGGGAAGTCTGGCTGCTCAGATGAATCCTCTGCTGCAAAAGTTGCAGATGAAGGAACTCTTTCAAAAGCTAGCA ATGAAGAACAATTTAAGGCAGGAAAGAAAGCTCCTTTTGGTCAAATACAAGCATTGCCAGTGGTCAACAAACAGAAGACTGTCGAGGATTGCAGCGGAAG ACTCCATAGAAGGTCATTTTCATTGGCCATCAAATGGAATTACTCATCAGCTACAAAGTCGAATTTATCATCGAATTCCTCATCGTTGTCTGGTTCTTCT TCATCATCCAGCTTGAGCAGTACCAGCAGCAGTAGTTCAAGTGGGATGCCATTTCTGAAGAGGAGTACAAGTACTGTAATAAGTACAGAAGTTGAGAATC CAATCCAAGGAGCTATAGCACACTGCAAACTGTCTCAGGAGGCTATTTGTTAA
AA sequence Show only first row Show all	>Lus10040336 pacid=23173899 polypeptide=Lus10040336 locus=Lus10040336.g ID=Lus10040336.BGIv1.0 annot-version=v1.0 MAANLLQSHDHHHSDDDDDFIDMEITSYSSTSNYLLQTMNSNSREFEFQKMSSTSLDQKDHSTSPADELFYNGKLLPLHLPPRFQMVDKILRNSSSFYSS SANTTPYDGDDCRNKDVFFDQEFYSTPLMTTTTPTPYDSCNISPFDSCPVSRELNPEEYLAEYSSSEVNSGYLHNPKRSSSWAKKLKLMKSSGLSSKLKA PRAYLKALFGKSGCSDESSAAKVADEGTLSKASNEEQFKAGKKAPFGQIQALPVVNKQKTVEDCSGRLHRRSFSLAIKWNYSSATKSNLSSNSSSLSGSS SSSSLSSTSSSSSSGMPFLKRSTSTVISTEVENPIQGAIAHCKLSQEAIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	0	1
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	11.4	0.8105
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042482 [exp]	12.2	0.7511
AT5G53420			CCT motif family protein (.1.2...		Lus10005008 [exp]	15.5	0.7573
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	22.8	0.7748
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	24.3	0.7883
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	34.1	0.7637
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	45.4	0.7356
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	49.9	0.7499
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	105.4	0.7292
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	206.6	0.7070

Compare expression of checked genes

Lus10040336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.