Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13560 762 / 0 unknown protein AT2G37370 555 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023462 [exp] 1290 / 0 AT5G13560 795 / 0.0 unknown protein Lus10025285 [exp] 503 / 2e-170 AT2G37370 535 / 0.0 unknown protein Lus10009063 [exp] 375 / 1e-122 AT2G37370 241 / 4e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048100 [exp] 820 / 0 AT5G13560 668 / 0.0 unknown protein Potri.010G212900 [exp] 814 / 0 AT5G13560 749 / 0.0 unknown protein Potri.016G080900 [exp] 601 / 0 AT2G37370 676 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040337 pacid=23173879 polypeptide=Lus10040337 locus=Lus10040337.g ID=Lus10040337.BGIv1.0 annot-version=v1.0 ATGTCATGGTTGAAATCCGCCGTGAGCAAGGCTGTGGAGGTTGGGAACAAGAATAACCTCACTCGCGCCGTCAAGAACTATGCCGACTCCGTCGTTCATC AGGCTGGCCAGGCCGTCTCCGAAGGGGCTAAAATCTTGCAGGATCGCATTGCCACTCGCAACTATAGAAGTGCTAAGCAAACAATCAAGAGATTGGAAGA GGCAGCTGTCTCCTGCAGAGGCCAGGAGAGAATTTTGTTAATGAGAAGATGGTTAGCTGTGCTCAAAGAAGCTGAGAAATCAGGAGCAGCTTCTTTGGAA GATAATAAATACAAGGCTATCGATCAGTACCTTCAGCACGATGATACTAGAGAAAGCCCGAGAAAACCATCCACAATTCTCTACTATGATGCTGATGTTG GTGGTGAACCGCTTCCTTTCCGTGACATTTTCCTGCAAAGTCAAGCTTTGGAGGGCATAACATTGTCCATGATACTTCACGCTCCACATGAAGATGAAAT TGCATTGTTGCTGGAGATCTTTGGAGTTTGTCTAACTGGAGGAAAGGAAGTACATATTGCAATTCTTAGCAGCATTCAGGATCTAGCTACTGCTTTTACA AAATACAAGGATGAAGTGCTGGTCAAAAGGGAGGAATTACTTCAATTTGTGCAAGGTGCCATTACAGGGCTGAAGATTAATGCTGAGTTGGTTAGAATTG ATGCTGAAACTGGTGACCTGAGGAACAAACTTGATGGGATGACTGTGCATGAGAAGCCAAAAAGTGAAACCCTGGACAAAGAAACTGATGATACTCCTAT TGCAGCTATAGAGGCCCTTAGACAAGCATTAGCTAGAATTCGAATTTGTTCGAGATTGGAGGGGCTTTTGTTGAAAAAGAAGAATCTAAGCTTTGGCGAC ACTCCTGAGATTCATGCTCAAAAGGTCGACAAGTTGAAGGTCTTGACAGAATCTCTTGCTAGTTCTGTATCAAAATCGGAAAAGCGTATCGTAGATCACA GATCACAGAAGGAAGAGGCACTGAAAGTTCGTGTCTCTAAAGCTGATGAGACCAGTGAAAAGGAAAAGGAAATAGTGGCCGAGATAAGTGGACTTGAAAA GGAAAGAGATGAATTGGAGGCCCAGTTGAAAAAGGTTAATATTTCCTTATCGGCTGCAAATGCACGCCTCAATAATGCCAGAGAAGAGAGGGACCAGTTT GAGGATGCAAACAGTCAGATCGTTGAGCATTTGAAGTCAAAGGAGGATGAGTTAAGGAGTTCGATTTCCGCATGCAAGGTAGAGTCCGATGTTCTGGGCA CATGGGTTAATTTTCTGGAGGACACTTGGGTTCTCCAGCGTACCTATGTAGAAATGACGGAGAAGCAGGTCAATGATGACTTGGAAAAGCATGAGGAGTA CTTCACAAGCTTGGCCATCAATCTTCTATCCGAGTATAAGAAAGAATTGGAGCCTTCTATTGGCCGCATTGGAACATATGTGGAGAACCTAAAGAAGTTA GGTCCAGGGTCAGATACATCGGTTAATCCGGATAAGCAAGATTCCGAAGCATTAAGCCCAAGGCTCCATCTCGAGGAAGAATATCTGCAGTACGAAGCAA AGATTGTGACCACCTTCAGTGTAGTAGATAACATGAGAGAGCATTTCTATGCTCTGCAAGGTGCAAGTTCCAGGAAAGACGATGAAAGGGTGAAAGAGTT ATTTGATGAAATCGAGAATCTGAGACAGCAATTCGATGCCATTGAGAGACCGAATCTTGAGATGGAGGTTCCGAGTTCCAAGCAAGAAACAGTACCATCT GAGAAGCCGGCAGCAGAAAAGCCATCCAACCCTTCAGAACATGGGGATGCTCCAACGAAATCCGATACAGACGAGGTTCCAAAGGTAGCTACTTCGCCGA AATCATCTAAAGCGGAGGATGTCAAGAAGAAACCCTCACCCACCGCAAGTGGTGGTGAGGCAGGAAAGAGCCTCGATGCAGAAGCAGAACTAGCGGAGCT GGAGTCAGAGTTTGGCAAGGTCGATCGAGAATATTCGGCGGAGGAGGTTGGCGATTGGGAGTTCGATGAACTCGAGAGGGAGTTACGAGCCGGTGATTCA GCATCATCAGCAGGAGGAAAGTGA
AA sequence Show only first row Show all	>Lus10040337 pacid=23173879 polypeptide=Lus10040337 locus=Lus10040337.g ID=Lus10040337.BGIv1.0 annot-version=v1.0 MSWLKSAVSKAVEVGNKNNLTRAVKNYADSVVHQAGQAVSEGAKILQDRIATRNYRSAKQTIKRLEEAAVSCRGQERILLMRRWLAVLKEAEKSGAASLE DNKYKAIDQYLQHDDTRESPRKPSTILYYDADVGGEPLPFRDIFLQSQALEGITLSMILHAPHEDEIALLLEIFGVCLTGGKEVHIAILSSIQDLATAFT KYKDEVLVKREELLQFVQGAITGLKINAELVRIDAETGDLRNKLDGMTVHEKPKSETLDKETDDTPIAAIEALRQALARIRICSRLEGLLLKKKNLSFGD TPEIHAQKVDKLKVLTESLASSVSKSEKRIVDHRSQKEEALKVRVSKADETSEKEKEIVAEISGLEKERDELEAQLKKVNISLSAANARLNNAREERDQF EDANSQIVEHLKSKEDELRSSISACKVESDVLGTWVNFLEDTWVLQRTYVEMTEKQVNDDLEKHEEYFTSLAINLLSEYKKELEPSIGRIGTYVENLKKL GPGSDTSVNPDKQDSEALSPRLHLEEEYLQYEAKIVTTFSVVDNMREHFYALQGASSRKDDERVKELFDEIENLRQQFDAIERPNLEMEVPSSKQETVPS EKPAAEKPSNPSEHGDAPTKSDTDEVPKVATSPKSSKAEDVKKKPSPTASGGEAGKSLDAEAELAELESEFGKVDREYSAEEVGDWEFDELERELRAGDS ASSAGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13560			unknown protein		Lus10040337 [exp]	0	1
AT5G24260			prolyl oligopeptidase family p...		Lus10018107 [exp]	1.0	0.7790
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	4.7	0.6823
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	5.7	0.7307
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	6.2	0.7469
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	25.8	0.7282
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	27.2	0.6651
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	29.1	0.7177
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	33.2	0.7161
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	33.9	0.6907
AT5G13560			unknown protein		Lus10023462 [exp]	37.2	0.7157

Compare expression of checked genes

Lus10040337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.