Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 78 / 1e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) AT4G22390 57 / 1e-08 F-box associated ubiquitination effector family protein (.1) AT3G06240 55 / 4e-08 F-box family protein (.1) AT1G11270 49 / 2e-06 F-box and associated interaction domains-containing protein (.1.2.3) AT1G47790 49 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT5G10340 49 / 5e-06 F-box family protein (.1) AT1G33530 46 / 3e-05 F-box family protein (.1) AT3G07870 45 / 4e-05 F-box and associated interaction domains-containing protein (.1) AT1G53550 45 / 5e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040463 [exp] 191 / 9e-57 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10010910 [exp] 187 / 9e-56 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10025893 [exp] 173 / 3e-52 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3) Lus10038210 [exp] 168 / 3e-48 AT1G71320 47 / 1e-05 F-box family protein (.1) Lus10031512 [exp] 167 / 7e-48 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10000190 [exp] 144 / 6e-39 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 144 / 6e-39 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 144 / 6e-39 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10043335 [exp] 110 / 5e-28 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010800 [exp] 102 / 4e-24 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 98 / 2e-22 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 79 / 9e-16 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 73 / 7e-14 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 73 / 7e-14 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 66 / 1e-11 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 65 / 3e-11 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 64 / 7e-11 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 63 / 1e-10 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 62 / 1e-10 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10040338 pacid=23173951 polypeptide=Lus10040338 locus=Lus10040338.g ID=Lus10040338.BGIv1.0 annot-version=v1.0 ATGTCAGACCACATTCCCTTGGAAGTCGTGACCGTCATTCTCGAGCGACTGAGCGTCAAGGATCTCGTAAGGTGCAGGCGCGTGTCGAAGCATTGGCTAG CCATAATCGACAGCCTGAACTTCATCCGTACAAAACTCCACTCGTCCATGTCCACAAACTCGAACGGGGCAGTTTTCCTTCACCCCCTATCTAAAAAGGG GGACAACAATGCCAGCAATCTTCTCTGCTGGAGAGAAGAGTATGGCTCTGGTCCAATCCAGTACCGTTCTGAAGATCCTGATCAAGTTGTACTCATGGGT TCCTGCCACGGCTTGATATGCTTCACTCGTGTCCACATTCCGCACGATCTTGTGATCCTGAATCCATCGACAGGGGAGCGCCATGTGGTCAGCAGTTTCT TGAACGATGAAGAGTTCGACGAGCTGCAAGCCTATGGGTTCGGCTTTCTCCACGATTTCGATCGGCTGGGATGTAACGAAGTGGACTACATATCCCAACC AGCAGCTGGTAGGAGTGTTTTCTGCGGCGCAATACATTGGTGTGTTATGGATATCCTGATGTTTGGCTGTGTCATTCTAGCGCTTGATCTAGCGTCGGAG ACCATGCACAGACTGCCAGTGCCGCACAATTTACATTGCCAGGGGAAGGGTTATTTCAAGATGAATGTTGGTGTTGTTGACTCCTGCTTCTGTATATGCG TTGTGTATAAAAAAGAAGGGAAAACTGACATCTGGGTTATGAAGGAATACTGGAGGGGTGAATCCTGGTGTAAAATGTACACCATTCAAGATTCCAATAC TCCAGTCAGTGTGATTCCGTTGGGTGGTAATGTTGGAGGTCGGATCCTGTTGCTCTATGGCCGGTCCCGGTTTGTTTGGTGTGATCCTGGGAAGAACTTG GTTGTCGAGGCTTTTGGTGCGGGGGGTGAAACGACATTTGAAGCCATTTACTCTGTAGAGAGTCTGATTAAGTTGTTCCAGCAGCCTGATGATCATGATG AGGAAGCTAAGCGGAAGGAACATGAGGCTGAGTTGGTACTCCGCAATCAAGATGCACAGTCGAATAATGAGTTTGCTTTTCCTGAGCTAAATTTGGATTT GGATTTATCAATTTTTGAAGAAATACCTACTGCCAGTGATGAAGAAGACTAG
AA sequence Show only first row Show all	>Lus10040338 pacid=23173951 polypeptide=Lus10040338 locus=Lus10040338.g ID=Lus10040338.BGIv1.0 annot-version=v1.0 MSDHIPLEVVTVILERLSVKDLVRCRRVSKHWLAIIDSLNFIRTKLHSSMSTNSNGAVFLHPLSKKGDNNASNLLCWREEYGSGPIQYRSEDPDQVVLMG SCHGLICFTRVHIPHDLVILNPSTGERHVVSSFLNDEEFDELQAYGFGFLHDFDRLGCNEVDYISQPAAGRSVFCGAIHWCVMDILMFGCVILALDLASE TMHRLPVPHNLHCQGKGYFKMNVGVVDSCFCICVVYKKEGKTDIWVMKEYWRGESWCKMYTIQDSNTPVSVIPLGGNVGGRILLLYGRSRFVWCDPGKNL VVEAFGAGGETTFEAIYSVESLIKLFQQPDDHDEEAKRKEHEAELVLRNQDAQSNNEFAFPELNLDLDLSIFEEIPTASDEED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	0	1
					Lus10002152 [exp]	2.0	1.0000
					Lus10005187 [exp]	2.8	1.0000
					Lus10010117 [exp]	3.5	1.0000
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	4.0	1.0000
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	5.0	1.0000
					Lus10039750 [exp]	5.5	0.9995
					Lus10013570 [exp]	6.3	0.7368
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	6.5	0.9671
					Lus10012774 [exp]	6.9	0.9642
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	7.3	0.9539

Compare expression of checked genes

Lus10040338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.