Plant FIBer expression Database

Lus10040339 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30200 40 / 7e-05 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004179
[exp]
61 / 7e-13 AT4G30200 46 / 3e-06 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Lus10038260
[exp]
55 / 7e-10 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Lus10025841
[exp]
0 / 1 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G091500
[exp]
50 / 4e-08 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Potri.006G167800
[exp]
44 / 6e-06 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10040339 pacid=23174067 polypeptide=Lus10040339 locus=Lus10040339.g ID=Lus10040339.BGIv1.0 annot-version=v1.0
ATGGGGAAAGAGAGGAAATACACCAGCCTCACCAAGCTCAAGATTATCCAACAGCTATTGAGGATCGTCCGCGATAAGAAATCCTCCGCCGATGCTGGCG
GCGACGGTGGCAGTGATGAGCCGGAGTTGTCTGCGTCTCCCGTTTCCAAGAAGCATAGGAAAATGGATGATTTCCCAACTTGGACTCCTCCTCTTCCTCC
TGCTCCTACCTTTTCGTCCTCCAATACGGTCTACTTCAAGAACGATCACGACAGAAAAAGGAAGAAGGTTGGAGTGACGGCGGCGGGGGTGTTGACTGCA
GAGATTGGCAGAAGGACAGGCCGATAA
AA sequence
>Lus10040339 pacid=23174067 polypeptide=Lus10040339 locus=Lus10040339.g ID=Lus10040339.BGIv1.0 annot-version=v1.0
MGKERKYTSLTKLKIIQQLLRIVRDKKSSADAGGDGGSDEPELSASPVSKKHRKMDDFPTWTPPLPPAPTFSSSNTVYFKNDHDRKRKKVGVTAAGVLTA
EIGRRTGR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30200 VEL1, VIL2 VIN3-Like 2, vernalization5/VI... Lus10040339
[exp]
0 1
AT4G03230 S-locus lectin protein kinase ... Lus10033752
[exp]
2.4 0.8661
Lus10009804
[exp]
3.7 0.8032
AT2G37880 Protein of unknown function, D... Lus10021495
[exp]
4.4 0.8972
AT2G38940 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE... Lus10033866
[exp]
10.4 0.8111
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Lus10035700
[exp]
12.1 0.8617
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Lus10014730
[exp]
13.2 0.8053
AT2G02120 PDF2.1, LCR70 LOW-MOLECULAR-WEIGHT CYSTEINE-... Lus10039622
[exp]
14.7 0.7578
AT5G57820 zinc ion binding (.1) Lus10007703
[exp]
18.1 0.7928
AT1G66370 MYB ATMYB113 myb domain protein 113 (.1) Lus10028513
[exp]
21.2 0.7577
Lus10000801
[exp]
21.5 0.6845

Lus10040339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.