Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28060 665 / 0 Pre-mRNA-splicing factor 3 (.1) AT3G55930 277 / 2e-84 Pre-mRNA-splicing factor 3 (.1) AT3G56790 63 / 5e-11 RNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023464 [exp] 1213 / 0 AT1G28060 743 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10031931 [exp] 95 / 3e-21 AT3G55930 71 / 5e-14 Pre-mRNA-splicing factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048000 [exp] 808 / 0 AT1G28060 652 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.010G213300 [exp] 796 / 0 AT1G28060 653 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.008G016200 [exp] 45 / 2e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [flax] [poplar] Acylphosphatase PF06544 [flax] [poplar] DUF1115 Protein of unknown function (DUF1115) CL0622 [flax] [poplar] PF08572 [flax] [poplar] PRP3 pre-mRNA processing factor 3 (PRP3)
Representative CDS sequence Show only first row Show all	>Lus10040340 pacid=23174022 polypeptide=Lus10040340 locus=Lus10040340.g ID=Lus10040340.BGIv1.0 annot-version=v1.0 ATGGATCGTTCCACCTCCGACAAGGATAAACCCTCCAAGCGTTACCGCGACGAACGGGATCGGGACTCCGGCAGAGACCACCGTGACAGGGAACACAAGC ACAGATCGCGGGACAAGGATCGGGATAGTACCTCTCACCACCACCGGTCCGATCGCGATGATCACAATCGCGACCGCGACCACCACCGCAAGCCTTCGGC GAAGCGTGATGATCGTGAGGGGTCTCGTGACCGAGATATCAAGCGAGAGCGGTCGGTAGATTTGAGAGACGATCGAGAAGGTAGCAGGGAGAGAGCGCAC GAACGTCGGAAGCGAGACGAGAGGGAAGATAGTAGAGATAGGCACGAGAAGCCTCGGGAGAGAGAAGTTAAGCGGGAGGATTCCTATGCCGGTAGGGAGA ACGAAGAGTTGGACGACGTTAGTAGAAGGAAGAGAAAAGACAGAGAAGGTAGCGGGGATGAAAGGGAGAAGAAGGAAGCTAGAGTGTCGCATGTAAAGAG AGAGAGGAGGAAATTTGGTGATAAGGTGAAGGAAGAGAATGTTGTGGATAATGGCGATAGTGCTCGTGTTACTGATAATTCGAATAGAGTTGAGTTTAGT GAGATTAAGGTTAAAGAGGAAGTTATCGAGGAGCCAATAGCTGGTGGCAGCACCATGGATGCTGGAATTCCTGCTCTAAATGGTGTGGCCTCCGGATCAT TGGCTGAGCCTTCGAGCATTGCTGTGTCCTCTGTACCTTCTCACTTATCTCTTCCTTCCAAGGTATCTTCAATTTCAAACACAAATGAAAATAAGGGAGT TAGTGTTACCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGGAACATCATCGATTGCGGGAAAAAGTGGAAGTTCATCCCTTGATGCTTTAGCA AAAGCTAAGAAAGCTATAGAAATGAAGAAGGGCATACAACAGAAGTTGGAGAGGCTACGCATGTTGAACAAAGCTAATAATTCAAGTTCAGGTGGTGGTG TGAAAGTACCACCTTCCTCTGCTGGTGTTTCAGCTACTGCCACTGCAACTCCTATGGGACAAACTGCTAGCGGCTTTCCACCGATTCCAGGTCTCAATAG CATACCTAACTACGAAGCTGTTAGACGAGCACAGGAGCTTGCTGCTAAGATGGGCTTCCGTCAGGATCCTGAGTTTGGCCCACTTATAAACTTGTTTCCT GGACAGATGCAGACAGAGGCTGCTGTGCCACAGAAGCCTACTAAGGTTCCTGTTCTCCGTGTAGATGCACTGGGGAGGGAAATAGATGAAAATGGAAATG TTGTGAATGTTACTAAACCAAGCAACCTTAGCACGCTCAAGGTCAACATTAACAAGCAGAAGAAGGATGCTTTCCAGATTCTTAAGCCTGAGTTGGAAGT GGATCCTGAATCAAACCCTCATTTCGATGCTAGAATGGGCATTGACAAGGTTAAGCTGCTGAGACCGAAGCGGATGTCTTTCCAGTTTGTTGAAGAAGGG AAATGGTCAAAGGATGCCGAGTCGATAAAATTGAGGAATCAATTTGGTGAAGAAAGAGCGAGAGATATGAAGGCCAGGCAAGCACTTCATGCGAAGGCTA AAGCAGCTCCTGATATAAATCCTAATCTTATAGAGGTCGGGGAAAGAGCTATGACGACGAAAGAAAAAGCCAAGGATCCGATTCCAGAAATTGAGTGGTG GGATGTGCCTCTTGTGGTTGGTGGTGCGTACGGTGAATACGAGGACGGCATTGTCGAGGACAATCAATTGAAGATGGAAAAAATCACAATCTACGCAGAA CATCCACGGCCGATCGAGCCTCCTGCCGAGCCAGCTCCTCCTCCGCCACAGCCTCTGAAGCTAACTAAGAAGGAACATAAGAAACTACGAACCCAACGCC GTCTTGCTAAAGAGAAAGACAAGCAGGAGCTGATTCGACAAGGCCTGCTCGAACCTCCAAAGCCGAAAGTCAAACTAAGCAATCTAATGAGGGTTCTCGG CTCCGAAGCAGTACAGGATCCGACCAAACTCGAGAAGCAAGTCCGTAACGATGCAGCTGAGCGAGAGCAAGCGCATATCGACAGGAACATTGCGAGGAAG CTCACTCCTTCCGAAGTCAGCGAGAAAAAGAAGAGGAAGCTGTTCAATGACAAGAATACGGTTGGAACGATGGTTTCGGTTTACAGAGTCAACGATCTCT CCCACAAGAAGACCCGGTTCAGAGTCGATGCCAATGCTGGCGAAAACCAGCTGTCCGGATGTTGTGCCATCACCGAGGGATTTAGCATTGTGGTTGTGGA AGGTGGGAGCAAATCGATCAAGAGGTACGGGAACTTGATGCTTAGGCGTATTAATTGGGCAGAGGCTGTGAATGATGAGGAAGACGAAGAAGGTGGTGGT GGTGGTGGTGATGATAAACCGCCCAACAAATGCATGCTGGTCTGGCAAGGGATCGTTGCGAAACCTAGCTTTCACAGGTTTTCGGTGCACGAGTGCATGA CTGATGCTGCTGCCAGGAAGATATTCGCTGATGCTGGTGTCGTCCAGTACTGGGATCTCGCAGTCAACTTCTCCGATGACATGGCTTGA
AA sequence Show only first row Show all	>Lus10040340 pacid=23174022 polypeptide=Lus10040340 locus=Lus10040340.g ID=Lus10040340.BGIv1.0 annot-version=v1.0 MDRSTSDKDKPSKRYRDERDRDSGRDHRDREHKHRSRDKDRDSTSHHHRSDRDDHNRDRDHHRKPSAKRDDREGSRDRDIKRERSVDLRDDREGSRERAH ERRKRDEREDSRDRHEKPREREVKREDSYAGRENEELDDVSRRKRKDREGSGDEREKKEARVSHVKRERRKFGDKVKEENVVDNGDSARVTDNSNRVEFS EIKVKEEVIEEPIAGGSTMDAGIPALNGVASGSLAEPSSIAVSSVPSHLSLPSKVSSISNTNENKGVSVTRSHEVPGKSSTDGTSSIAGKSGSSSLDALA KAKKAIEMKKGIQQKLERLRMLNKANNSSSGGGVKVPPSSAGVSATATATPMGQTASGFPPIPGLNSIPNYEAVRRAQELAAKMGFRQDPEFGPLINLFP GQMQTEAAVPQKPTKVPVLRVDALGREIDENGNVVNVTKPSNLSTLKVNINKQKKDAFQILKPELEVDPESNPHFDARMGIDKVKLLRPKRMSFQFVEEG KWSKDAESIKLRNQFGEERARDMKARQALHAKAKAAPDINPNLIEVGERAMTTKEKAKDPIPEIEWWDVPLVVGGAYGEYEDGIVEDNQLKMEKITIYAE HPRPIEPPAEPAPPPPQPLKLTKKEHKKLRTQRRLAKEKDKQELIRQGLLEPPKPKVKLSNLMRVLGSEAVQDPTKLEKQVRNDAAEREQAHIDRNIARK LTPSEVSEKKKRKLFNDKNTVGTMVSVYRVNDLSHKKTRFRVDANAGENQLSGCCAITEGFSIVVVEGGSKSIKRYGNLMLRRINWAEAVNDEEDEEGGG GGGDDKPPNKCMLVWQGIVAKPSFHRFSVHECMTDAAARKIFADAGVVQYWDLAVNFSDDMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10040340 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	1.0	0.8175
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	19.1	0.6829
AT4G17310			unknown protein		Lus10028954 [exp]	28.1	0.6284
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	36.9	0.6882
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	37.3	0.6800
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	48.9	0.6846
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	63.2	0.6207
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	127.6	0.6338
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	193.5	0.6026
AT3G48120			unknown protein		Lus10042150 [exp]	208.0	0.5989

Compare expression of checked genes

Lus10040340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.