Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39350 317 / 2e-98 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT5G13580 274 / 3e-82 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G37360 274 / 7e-82 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55110 268 / 4e-80 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55130 268 / 8e-80 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G53510 250 / 3e-73 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55100 239 / 1e-69 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G06530 128 / 7e-31 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 126 / 6e-30 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G25620 123 / 9e-30 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023465 [exp] 532 / 0 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030307 [exp] 285 / 5e-91 AT2G37360 366 / 9e-122 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 295 / 6e-90 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 177 / 9e-47 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 174 / 1e-45 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10001971 [exp] 155 / 7e-45 AT3G55090 79 / 3e-18 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 164 / 8e-43 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 160 / 3e-41 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 158 / 2e-40 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047900 [exp] 409 / 4e-133 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 407 / 2e-132 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 320 / 2e-99 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 318 / 2e-98 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 303 / 3e-93 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 174 / 1e-45 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 174 / 1e-45 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 156 / 5e-40 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.019G083000 [exp] 130 / 2e-31 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 129 / 3e-31 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10040341 pacid=23173957 polypeptide=Lus10040341 locus=Lus10040341.g ID=Lus10040341.BGIv1.0 annot-version=v1.0 ATGTCACGCGTTCTTGCTGAATATCCCTCACCCAATCGTGACACAATTCCATTTCGCTCTCAACCTGGAGACATGGAGCTCACTGATCATCAACTCCCGC CGCCGGCATCTTCCCGACGAGCAGCCTTAGGCCTTTCTCCGACTCTCGGCCAGCTTCTGAAGCGCGTTGGCGATGTTCGGAAGGAAGCCACCGGCGACGG AAGCGAAACTCCCGTCCATCAGGTGCTCGAGCTCGGGGATTCTAATCCGGAAGTTCCCCGATCGATTCCGTTCGTCCTGTCATTCAGTAATCTCACTTAC AGCGTTCGTGTCCGCCGCAAGCTGAGGATTCCGGATATGCTTCCGGTTCGCCGGAACCGACTCGGACCGACGGCGACAGATCCTGTCGCCGGAGAGAGCT TGAGCCTGTTCACGACGACGAAGACGCTTCTCAACGATATCTCCGGAGAAGCACGTGACGGCGAGATTTTGGCTGTTCTCGGAGCGAGTGGCTCCGGGAA ATCGACTCTGATCGATGCTCTGGCGAATCGAATTGCAAAAGATTCGTTGAAAGGAACGGTGAATTTAAATGGCGAGGTTCTTGAATCTCGGATGCTGAAA GTGATCTCTGCTTACGTGATGCAGGATGATTTGCTTTATCCTATGCTGACTGTTGAAGAGACGCTGATGTACGCGGCGGAGTTCCGGTTACCGAGGACTC TGTCCACGTCGAAGAAGAAGGCTCGAGTCCAGGCGCTGATCGACCAGCTCGGACTCCGGAACGCCGCGAAGACGGTCATCGGAGACGAAGGCCACCGGGG TGTCTCCGGCGGAGAACGACGCCGTGTATCGATCGGAATCGACATAATCCACGATCCGATCATCCTGTTTCTTGACGAGCCAACCTCCGGACTCGACTCC ACCAGCGCTTTCATGGTGGTCAAAGTCCTCCAGCGAATCGCTCAGAGCGGCAGCATCGTCATCATGTCCCTGCGTCTGCGCCCGCGTCGCCGCACCCCAG CCGAGCTCCAGAATCTTGGGATTACTCGACCGGTTGATTTTCCTCTCCCGCGGCCAAACAGTCTACAGCGGGCCCCCCACCCAGTTACCGGGTTTCTTCT CGGATTTCGGCCACCCGATACCCGAGTCCGAGAACCGAACAGAGTTCGCACTAGATCTGATCAGAGAACTCGAAGGCTCCCCTGGGGGAACCAAATCCCT AGGCGAATTCAACAAACAATGGCAAACAATGAAAAACTCCGGCGGAATCAACCACCACCACAACAACACCAACCACCGCCAGATCTCACTCAAGGAAGCC ATCTCCGCCAGCATCTCAAGAGGCAAACTCGTCTCCGGCGCAACAAACGACAGCAACTCAACCTCCATGGTCCCAACCTTCGCAAACCCAATCTGGAAAG AAATGACAGTCCTAGCAAACAGATCCATAAAAAACTCCCGCAGAATGCCGGAGATCTTCGGCGTCCGCCTCGGAGCAGTCTTAGTAACCGGATTCATCCT CGCCACAATGTTCTGGCAGCTGGACAACTCCCCAAAAGGAGTCCAAGAGCGACTCGGATTCTTCGCCTTCGCCATGTCAACAACCTTCTACACCTGCGCC GACGCGCTCCCAGTCTTCCTCCAGGAGCGTTACATCTACCTCCGGGAAACTGCACACAACGCATACAGAAGATCCTCATACGTCCTCTCCCACGCATTCG TCTCCCTCCCAGCACTAATCTTCCTCTCAATCACCTTCGCCGCGACGACGTTTTGGGCAGTCGGCTTAGACGGCGGGTTCTCGGGTTTCCTATTCTACTT CTTCATAATCCTCGCTTCATTCTGGGCAGGGAATTCCTTCGTGACATTCTTATCCGGCGTCGTTCCGCATGTAATGCTTGGTTACACAATCGTGGTAGCT ATCCTGGCGTACTTCCTACTCTTCAGCGGGTTTTTCATAACCCGGGATAG
AA sequence Show only first row Show all	>Lus10040341 pacid=23173957 polypeptide=Lus10040341 locus=Lus10040341.g ID=Lus10040341.BGIv1.0 annot-version=v1.0 MSRVLAEYPSPNRDTIPFRSQPGDMELTDHQLPPPASSRRAALGLSPTLGQLLKRVGDVRKEATGDGSETPVHQVLELGDSNPEVPRSIPFVLSFSNLTY SVRVRRKLRIPDMLPVRRNRLGPTATDPVAGESLSLFTTTKTLLNDISGEARDGEILAVLGASGSGKSTLIDALANRIAKDSLKGTVNLNGEVLESRMLK VISAYVMQDDLLYPMLTVEETLMYAAEFRLPRTLSTSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDS TSAFMVVKVLQRIAQSGSIVIMSLRLRPRRRTPAELQNLGITRPVDFPLPRPNSLQRAPHPVTGFLLGFRPPDTRVREPNRVRTRSDQRTRRLPWGNQIP RRIQQTMANNEKLRRNQPPPQQHQPPPDLTQGSHLRQHLKRQTRLRRNKRQQLNLHGPNLRKPNLERNDSPSKQIHKKLPQNAGDLRRPPRSSLSNRIHP RHNVLAAGQLPKRSPRATRILRLRHVNNLLHLRRRAPSLPPGALHLPPGNCTQRIQKILIRPLPRIRLPPSTNLPLNHLRRDDVLGSRLRRRVLGFPILL LHNPRFILGREFLRDILIRRRSACNAWLHNRGSYPGVLPTLQRVFHNPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040341 [exp]	0	1
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	2.0	0.9598
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	2.8	0.9478
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10001971 [exp]	3.9	0.9196
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	7.7	0.9305
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018525 [exp]	7.7	0.8828
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	10.1	0.9142
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006909 [exp]	10.4	0.8842
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	10.6	0.8983
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	11.1	0.9223
					Lus10014682 [exp]	12.0	0.8802

Compare expression of checked genes

Lus10040341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.