Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16430 76 / 4e-18 Surfeit locus protein 5 subunit 22 of Mediator complex (.1) AT1G07950 72 / 1e-16 MED22B Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023466 [exp] 107 / 1e-30 AT1G07950 198 / 4e-66 Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080700 [exp] 84 / 3e-21 AT1G07950 165 / 4e-53 Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040343 pacid=23173901 polypeptide=Lus10040343 locus=Lus10040343.g ID=Lus10040343.BGIv1.0 annot-version=v1.0 ATGGAAAATTGGAAATTGGTCTTCGACCGCAAGCTCCTGCTACGCCCGCACGCTCCTCTCCATTCACGTCCTCGTCGGCGGTGTCATCAGCCTCAAATCG GCAGTCACCTCCGATCCAACCAATCACTCTCCTGGACAAGATCCGACCCTGCTCCGACGACAACGAAGTCACCCGATTCTATCGCTTTCTTTGTTTCTTC TTATCTTATTCCAATCAGCAACTGTAAACTGATTGTAATTGCTTACTCCGAAACAGACCACGTGGACCAGAGAATAGCAGAATTCGACCAACAGCCGGAG AAAAGTGATAACATGTTAGCTAGAATTGCAGAGGAGGCCGTGGCTAGTCTCAAAGAGCTCGAATCTCATTACTACTCTTCGTCACAGAGAACAAACCAAA ACCTGCAGACTTGA
AA sequence Show only first row Show all	>Lus10040343 pacid=23173901 polypeptide=Lus10040343 locus=Lus10040343.g ID=Lus10040343.BGIv1.0 annot-version=v1.0 MENWKLVFDRKLLLRPHAPLHSRPRRRCHQPQIGSHLRSNQSLSWTRSDPAPTTTKSPDSIAFFVSSYLIPISNCKLIVIAYSETDHVDQRIAEFDQQPE KSDNMLARIAEEAVASLKELESHYYSSSQRTNQNLQT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	0	1
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	8.4	0.8398
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	9.2	0.8286
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	11.0	0.8109
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	15.5	0.7579
AT5G44180	HD		Homeodomain-like transcription...		Lus10017688 [exp]	18.5	0.8068
AT1G48160			signal recognition particle 19...		Lus10043056 [exp]	24.8	0.7575
AT1G70350			unknown protein		Lus10013008 [exp]	26.1	0.8032
AT5G52545			unknown protein		Lus10014958 [exp]	26.7	0.8051
					Lus10027225 [exp]	29.3	0.7691
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10012188 [exp]	32.6	0.7416

Compare expression of checked genes

Lus10040343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.