Plant FIBer expression Database

Lus10040344 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12345 125 / 2e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023468
[exp]
117 / 2e-34 AT3G12345 101 / 1e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G047800
[exp]
152 / 1e-46 AT3G12345 143 / 3e-43 unknown protein
Potri.010G213600
[exp]
152 / 2e-46 AT3G12345 144 / 8e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10040344 pacid=23174042 polypeptide=Lus10040344 locus=Lus10040344.g ID=Lus10040344.BGIv1.0 annot-version=v1.0
ATGGCAGCGCTACCAGCTCCGCCGTCTCTGCAGCTCTCAACAACGACAACCACCGCCACTCTGTTATTCTCTTCTCCGCTCTCCTCCTCCGCCTTTTCGA
TCAAGCACCGTCAGCGCACCTCCGCCGCACGCGCCACCGCCGACGACGAGTCCTCCTCCTCCGCCTCCCAGCCGGAGTCGACCGCACCGGAAGCTCCCTC
CTCGTCCTCCGACGACCCCTTCGAATCGCGTCTCTCGAGTTTCCGCCTCAAGTACCGAGCAGGAACAGGGAAGAAGGCGGAGATGCGGAAGGCTAGGAAG
AAAGGAGCCGCCGCCGCAGCGTCCGGATCGACCCTCTACCTACCTCCGGTGCCGCTGAAGGAGCCGACCTCTGCAGGATTAAAAGTGGAGTTCGGATTCA
CTCCGTACAGCGAGAAAGTGAACGGAAGGATCTCGTTCCTGGGGCTTGCGGCTCCGCTGCTTGTGGAGCTGGCCACTGGGAAGAGCATGCTCAGCTACCA
CACGCCGGCGATCGTGATGGTTCAGATCTACTTCGTGGCGGCGGTGTCGGCGGTGTATATGAAGTACGAGAAGGAGAAGATTAGCGTCTGGCCGGAGTCG
GCTTCTCCCTCGAAAGAATGA
AA sequence
>Lus10040344 pacid=23174042 polypeptide=Lus10040344 locus=Lus10040344.g ID=Lus10040344.BGIv1.0 annot-version=v1.0
MAALPAPPSLQLSTTTTTATLLFSSPLSSSAFSIKHRQRTSAARATADDESSSSASQPESTAPEAPSSSSDDPFESRLSSFRLKYRAGTGKKAEMRKARK
KGAAAAASGSTLYLPPVPLKEPTSAGLKVEFGFTPYSEKVNGRISFLGLAAPLLVELATGKSMLSYHTPAIVMVQIYFVAAVSAVYMKYEKEKISVWPES
ASPSKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12345 unknown protein Lus10040344
[exp]
0 1
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Lus10002078
[exp]
1.4 0.9705
AT5G08410 FTRA2 ferredoxin/thioredoxin reducta... Lus10013448
[exp]
3.2 0.9616
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Lus10012452
[exp]
4.6 0.9590
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10028299
[exp]
6.0 0.9471
AT1G74730 Protein of unknown function (D... Lus10042179
[exp]
7.4 0.9416
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Lus10020508
[exp]
8.8 0.9403
AT2G44310 Calcium-binding EF-hand family... Lus10008649
[exp]
10.2 0.9111
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Lus10042673
[exp]
11.7 0.9029
AT5G52420 unknown protein Lus10027495
[exp]
12.6 0.9283
AT1G71500 Rieske (2Fe-2S) domain-contain... Lus10001278
[exp]
12.6 0.9386

Lus10040344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.