Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55080 428 / 6e-147 SET domain-containing protein (.1.2) AT3G07670 100 / 2e-22 Rubisco methyltransferase family protein (.1) AT1G14030 76 / 2e-14 Rubisco methyltransferase family protein (.1) AT5G14260 72 / 4e-13 Rubisco methyltransferase family protein (.1.2.3) AT1G01920 59 / 6e-09 SET domain-containing protein (.1.2) AT5G17240 57 / 2e-08 SDG40 SET domain group 40 (.1) AT2G18850 50 / 3e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023469 [exp] 296 / 4e-98 AT3G55080 204 / 4e-64 SET domain-containing protein (.1.2) Lus10012309 [exp] 86 / 1e-17 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 75 / 3e-14 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10036780 [exp] 73 / 2e-13 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10022333 [exp] 68 / 7e-12 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 67 / 1e-11 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10016435 [exp] 58 / 9e-09 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10013825 [exp] 47 / 2e-05 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10021783 [exp] 45 / 0.0001 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047400 [exp] 527 / 0 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.014G169300 [exp] 95 / 1e-20 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 82 / 1e-16 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.017G066500 [exp] 66 / 2e-11 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.014G077700 [exp] 55 / 8e-08 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 49 / 5e-06 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 46 / 5e-05 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.006G168900 [exp] 45 / 0.0001 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10040345 pacid=23174006 polypeptide=Lus10040345 locus=Lus10040345.g ID=Lus10040345.BGIv1.0 annot-version=v1.0 ATGCTTCTACCCACTTCATGCAAGTTTCGACGGCAGCTCCTCACCGTCTCTCGTCGTTTCTCCACCACATTCAACTTCTCTTCCTCCCGGTCACAAGCGA CGTTGAATCCCCCAGATAAAGACTGCGAAGAGTTTTTGCCGTGGTTGGAGAAGAAAGCAGGAGCTGAGATTTCGTCCAAGCTCTACATCGGAAAGTCGTC ATACGGCAGATCACTGTTTGCTTCTCAACACATAAAAAATGGAGACTGCATATTGGAGGTGCCATTCAATTCGCAAATAGCACCAGATAATTTACCTCCA GACGTCAGAGATGCATTGGTTGATGAAGGTGATCATGTCACAAAGGTTGCTATGGTTCTTCTGGCTGAATGGAAAAAGGGCAAGGACTCAAGCTGGGCTC CCTATATCAGCTGCCTTCCTCGCCTTGAAGGAATGCATAGCACAATACTCTGGAGTGAACATGAGTTGGATATGGTTCGTGCAAGTTCAGTCTATGAGGA AACTGTCAAACAAAAAGCTCAAATTGGGAAGAATTTCTTAAAGATTGGAGTAGTACTTGAAAAATTCCCTGAAATCTTTGGAAGTGTCACTTATGAAGAT TTTATGCACGCATATGCTTTAGACGGGGCATGCTTGAAACGTACAACTGATTCTTCCACCAATGTAACAGTGAAATCAAGAGCTTGGGGAACCCCAAAGG GTGTTTCTCTGATTCCATTTGCAGATTTTATGAACCATGATGGGGTTTCTGAAGCAATTGTGTTGAATGATGAACACAAACAAGTGTCTGAGGTCGTTGC TGATTGCAATTATGCTCCTCAAGAAGAGGTACAAATCAGCTACGGGAAATTTGGAAATGCTACACTTATGTTGAACTTCGGGTTTACCGTTCCACACAAT ATTCATGATCAGGTGGAGATCCAGATGAGTATATCTGACAGTGATGTTTTGCATGAAATGAAGAAAGATATTTTGCAAAGACATCAGTTGCCAACAACTC GAGGTCCAAATGATACCGAGCCATCTTCTTGGAATTGTTTCGCAATCAGGGAAGTGAAGTCGGCTACAGGGAAAGGGAAGGGGATTCCACAATCACTCCG TGCATTTGCTCGTGTTGTGAGTTGTAATCATCCCAAAGATATATGCGGTCTAGTTGCTGAAGCTGCACAGAATGATGGTCGTCTGGCAAGGCGCCCCTTC AAAGATAGTAACAGAGAAATACGAGCTCACAGCATCTTGCTATCGCACATTATCCGACTGATTGATCAATACCGTGCATCAGTTCAGTCTTTAGACCGTT GGAGCTCCAGGCATCCAAATCGTATGCAGATGGCCTTGAACCTTCTCTCTGGTGAGCTCCGCATTCTTGAATCTGCTTCAGCTTGGCTCGGGAACTACTG TGCAACTCTGCCGGAAGAGTCGATCGCTGCATTGATCGATGTAAGTAACGGTAACAAACGTATTTGA
AA sequence Show only first row Show all	>Lus10040345 pacid=23174006 polypeptide=Lus10040345 locus=Lus10040345.g ID=Lus10040345.BGIv1.0 annot-version=v1.0 MLLPTSCKFRRQLLTVSRRFSTTFNFSSSRSQATLNPPDKDCEEFLPWLEKKAGAEISSKLYIGKSSYGRSLFASQHIKNGDCILEVPFNSQIAPDNLPP DVRDALVDEGDHVTKVAMVLLAEWKKGKDSSWAPYISCLPRLEGMHSTILWSEHELDMVRASSVYEETVKQKAQIGKNFLKIGVVLEKFPEIFGSVTYED FMHAYALDGACLKRTTDSSTNVTVKSRAWGTPKGVSLIPFADFMNHDGVSEAIVLNDEHKQVSEVVADCNYAPQEEVQISYGKFGNATLMLNFGFTVPHN IHDQVEIQMSISDSDVLHEMKKDILQRHQLPTTRGPNDTEPSSWNCFAIREVKSATGKGKGIPQSLRAFARVVSCNHPKDICGLVAEAAQNDGRLARRPF KDSNREIRAHSILLSHIIRLIDQYRASVQSLDRWSSRHPNRMQMALNLLSGELRILESASAWLGNYCATLPEESIAALIDVSNGNKRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	0	1
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	2.4	0.8203
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10012051 [exp]	3.2	0.7906
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	3.2	0.8169
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	3.9	0.8165
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	6.5	0.7870
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	8.9	0.7541
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	9.4	0.7936
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	11.6	0.7254
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	12.8	0.7720
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	13.0	0.7665

Compare expression of checked genes

Lus10040345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.