Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 594 / 0 Protein phosphatase 2C family protein (.1.2) AT3G55050 565 / 0 Protein phosphatase 2C family protein (.1.2) AT4G38520 517 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 513 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 500 / 5e-178 Protein phosphatase 2C family protein (.1) AT5G02760 450 / 2e-158 Protein phosphatase 2C family protein (.1) AT3G17090 407 / 2e-141 Protein phosphatase 2C family protein (.1.2) AT5G06750 375 / 8e-129 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 373 / 5e-128 Protein phosphatase 2C family protein (.1) AT3G16560 155 / 1e-42 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023470 [exp] 723 / 0 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 673 / 0 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10001976 [exp] 607 / 0 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 534 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 520 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 514 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 498 / 5e-177 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 498 / 6e-177 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 484 / 1e-171 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214700 [exp] 616 / 0 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 613 / 0 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 551 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 540 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 535 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 532 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 489 / 5e-174 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 426 / 8e-149 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 421 / 5e-147 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 395 / 2e-136 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10040346 pacid=23173874 polypeptide=Lus10040346 locus=Lus10040346.g ID=Lus10040346.BGIv1.0 annot-version=v1.0 ATGAAAATCGTTGCAAACTGCTGGAGGCCTTCGGTGGAAGGAGAATCTAATAGAGGTGGAGAAGCTACCGGCCGTGTTGATGGATTGCTTTGGTACAAAG ATTCTGGCCGCCATGTGAATGGGGAATTCTCTATGGCAGTAATTCAAGCTAACAATCTGCTAGAAGACCAAAGCCAAGTTGAATCCGGGCCTATGAGTTC GCACGAATCAGGTCCTCAGGGTACATTTGTGGGAGTTTATGACGGCCATGGAGGTCCGGAAGCTGCCCGATTCGTCAATGAGCACCTTTTCGATAATGTT AAGAGATTTACATCCGAGAGTCATGGGATGTCGAGTGACGTGATTACGAAAGCCTTTCTGGCGACAGACGAGGAGTTTCTTACTCTAGTGAAAGACCAAT GGATGTATAAGCCACAGATTGCTTCCGTGGGAGCATGTTGTTTAGTAGGAATAATATGCAGTGGACTTCTATACATTGCGAACGCTGGTGATTCTCGGGC GGTATTAGGAAGACTGGAGAATACCATGAAGGAAGTTAAGGCCATTCAGTTGTCTTCTGAACACAATGCCAGTATAGAATCTGTGAGAGAGGAGTTGCAT TCGTTGCATCCCGATGATCCTCAGATTGTCGTTCTAAAACACAACGTTTGGCGTGTGAAGGGCCTTATCCAGGTATCGAGATCGCTTGGGGATGCATACC TCAAGAGAGCAGAATTCAACAGAGAGCCACTGTTGGCGAAATTCAGACTGGCCAATCCGTTCGAAAATCCAATCCTTTTGGCCGAGCCAGCGATCACAGT GCAGAGACTGGTTCCCGAGGATCAGTTTCTAATATTTGCATCGGACGGCTTGTGGGAGCACCTGACCAACCAGGAGGCCGTCAATATTGTCCATAACTGT CCTCGCAACGGTGTGGCAAGGAAGCTTCTGAAGTCTGCACTCCACGAAGCAGCAAAGAAGAGGGAAATGAGATACTCAGACTTGAAGAAGATCGACCGTG GTGTGAGGAGACATTTCCACGATGACATCACCGTCATAGTTCTGTTCCTGGATTCACATATGATCAGTCGCAGCTCGTGCAGAAGTCCTCGGGTTTCTGT TCGAGGAGGAGGCGGTATGGCTGGACGCAGCGCCAGTGCCACCTTTTGA
AA sequence Show only first row Show all	>Lus10040346 pacid=23173874 polypeptide=Lus10040346 locus=Lus10040346.g ID=Lus10040346.BGIv1.0 annot-version=v1.0 MKIVANCWRPSVEGESNRGGEATGRVDGLLWYKDSGRHVNGEFSMAVIQANNLLEDQSQVESGPMSSHESGPQGTFVGVYDGHGGPEAARFVNEHLFDNV KRFTSESHGMSSDVITKAFLATDEEFLTLVKDQWMYKPQIASVGACCLVGIICSGLLYIANAGDSRAVLGRLENTMKEVKAIQLSSEHNASIESVREELH SLHPDDPQIVVLKHNVWRVKGLIQVSRSLGDAYLKRAEFNREPLLAKFRLANPFENPILLAEPAITVQRLVPEDQFLIFASDGLWEHLTNQEAVNIVHNC PRNGVARKLLKSALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLFLDSHMISRSSCRSPRVSVRGGGGMAGRSASATF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	1.0	0.8597
AT4G03230			S-locus lectin protein kinase ...		Lus10038212 [exp]	4.7	0.7536
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	5.5	0.7862
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	7.1	0.7804
					Lus10023092 [exp]	8.9	0.7747
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	10.4	0.7717
					Lus10010597 [exp]	11.6	0.7737
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	13.7	0.7591
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10009113 [exp]	15.0	0.6754
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	21.8	0.7431

Compare expression of checked genes

Lus10040346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.