Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55040 289 / 2e-97 GSTL2 glutathione transferase lambda 2 (.1) AT5G02790 287 / 3e-97 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 285 / 1e-96 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G19570 67 / 1e-12 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 64 / 2e-11 DHAR3 dehydroascorbate reductase 1 (.1) AT1G78380 62 / 5e-11 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G78370 58 / 1e-09 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G53680 52 / 8e-08 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G17180 51 / 2e-07 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G75270 49 / 1e-06 DHAR2 dehydroascorbate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003994 [exp] 291 / 9e-99 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10015049 [exp] 276 / 1e-92 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10019895 [exp] 254 / 1e-79 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10009135 [exp] 57 / 4e-09 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10005592 [exp] 56 / 7e-09 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10014022 [exp] 57 / 9e-09 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10042469 [exp] 55 / 1e-08 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 54 / 2e-08 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10028510 [exp] 55 / 4e-08 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046800 [exp] 379 / 2e-132 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.016G083500 [exp] 290 / 1e-98 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 285 / 2e-96 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.010G214800 [exp] 129 / 1e-36 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.011G140400 [exp] 70 / 7e-14 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 62 / 5e-11 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 59 / 3e-10 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 59 / 5e-10 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 59 / 5e-10 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 59 / 6e-10 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040347 pacid=23174049 polypeptide=Lus10040347 locus=Lus10040347.g ID=Lus10040347.BGIv1.0 annot-version=v1.0 ATGACCACATTCGCTCTCAATGGTTCCTCTGCTGCATTCTCTCTCAGACCCTCTTCGTCTCTCACTCGCCATATCCAACCTGTGGGAACCCTCCATAATG AATCCATTGCTTCTGCAAAATTACCCAGTTGGTCCTCTGGCGCAATCTTTACCTTCAACTTGCGCCACAAATTCAGAGTCGCACCAATCTTTGCAACAGT AGTGGCTGCTGCTGGTGTTGGAGAGAATCTCCCGCAGCCTCTTACTTCTGCTTCAGACCCTCCTCCAATCTTCAACGGCACGACAAGGTTGTACTTGTCA TATACATGCCCGTATGCGCAGCGCGTGTGGATCACTCGTAACTGTAAGGGGTTGCAGGATGAGATCAAGTTAGTTCCTCTTGATCTCAAAGACAGGCCCT CTTGGTACAAGGACAAAGTTTACCCTCCTAACAAGGTACCTGCTTTGGAGCATAACAAGGAAGTGAAAGGAGAGTCACTCGATTTGATGAAGTACATCGA CACTCATTTCCACGGACCGCCACTCCTCCCCCATGAGCCTGCGAAGAGGGAGTTCGCGGAAGAACTGTTGGGTAGTGTCGGATCGTTCTATAAAGCTGTG ACTTCCACACTCAAAGGAGAAGCAGATGAAGGATTGCTGTCCACAGCTTTTGATAGGGTCGAAACAGCTCTCTCCAAGTTTGATGATGGACCTTTTTTCC TTGGCCAGTTCAGTCTGGTAGATATAGCCTATGTTCCGTTCATCGAAAGATTCCAGCCCGCAGTGCTAGACATGAGAAACTACAACATCACTTCAAGAAG GCCTAAACTTGCTGCATGGATTGAGGAGATGAACAAAAATGAAGCTTACAACGAAACTCGACGCGATTCAAAAGAACATGTTGAGAATTACAAGAAACGC TTTGCAGTATTCTCCCTTCTCAGCGAACACATTATTTTCACAAACTTCGCCGTTATATCTACTTGGTTTCATTAA
AA sequence Show only first row Show all	>Lus10040347 pacid=23174049 polypeptide=Lus10040347 locus=Lus10040347.g ID=Lus10040347.BGIv1.0 annot-version=v1.0 MTTFALNGSSAAFSLRPSSSLTRHIQPVGTLHNESIASAKLPSWSSGAIFTFNLRHKFRVAPIFATVVAAAGVGENLPQPLTSASDPPPIFNGTTRLYLS YTCPYAQRVWITRNCKGLQDEIKLVPLDLKDRPSWYKDKVYPPNKVPALEHNKEVKGESLDLMKYIDTHFHGPPLLPHEPAKREFAEELLGSVGSFYKAV TSTLKGEADEGLLSTAFDRVETALSKFDDGPFFLGQFSLVDIAYVPFIERFQPAVLDMRNYNITSRRPKLAAWIEEMNKNEAYNETRRDSKEHVENYKKR FAVFSLLSEHIIFTNFAVISTWFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	0	1
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	2.8	0.9317
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	9.3	0.9001
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	11.5	0.8971
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10031517 [exp]	11.6	0.8776
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	11.7	0.8946
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	13.3	0.8774
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	14.4	0.8983
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	17.1	0.8955
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	17.3	0.8957
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10039589 [exp]	19.0	0.8923

Compare expression of checked genes

Lus10040347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.