Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 854 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 782 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 648 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 165 / 2e-44 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 102 / 3e-23 PAM1 plant adhesion molecule 1 (.1) AT3G02460 96 / 6e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 59 / 7e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 57 / 5e-08 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 56 / 1e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 53 / 6e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023472 [exp] 1415 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 1046 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 641 / 0 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036500 [exp] 626 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10036501 [exp] 181 / 5e-51 AT3G55020 141 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 173 / 3e-47 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 171 / 2e-46 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 100 / 1e-22 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 99 / 7e-22 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 986 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 979 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 714 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 165 / 2e-44 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 163 / 9e-44 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 97 / 2e-21 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 95 / 1e-20 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.001G316700 [exp] 54 / 3e-07 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 52 / 9e-07 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 51 / 3e-06 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10040349 pacid=23173864 polypeptide=Lus10040349 locus=Lus10040349.g ID=Lus10040349.BGIv1.0 annot-version=v1.0 ATGAAGGATCAAGCCAAGGCGTCGAATCCTCCCCTCGGATTCGACCTCATGAGGGATGCATATGGATTTGCAGTCAGGCAACAGCATGTGCAGAGATACA GAGAGTATGCTAATATCTACAAGGAGGAAGAGGAGGAAAGGTCAGACAGATGGGAAAGTTTCTTGGACCGATTGGGCAAACCTGCTCGTCTGCCTGTAAA TGGGTCTTCTGTGGAAGAAACTAGGGCATTAAGTGGTGAAGCAACAGATGACATTTTGAGTGATGGGAACCATAATTCTGATGTTTCACACGATGACCTT ACTGAGGAGGGGAAACAGTCCAAAGCTAATAGAAGAATACATAGAATCCAAATTTGGACAGAGACTAGACCATCACTTCGAGTCATTGAAGATATGATGA ATGTCCGTGTTAAAAACAAGGCCAATCAATTGATGGAAGAGCACGGTGATATGGACAAAAAGTCAGATTTGACATTTAAAGATATTAACTCAGAAAAAGG AGTGACTGAGGAAGATTCCGAGGATGAGTTTTATGATGTGGAGCGGTCAGACGATCCAATACCCGATGTTCCTCCAGTTGAGAATGTAGCGGCATCAGTA ACAGGTGCTACAGATGCTGATGAGGCCCTTCAAGAAGATTCGTCTTGGAAAGAAGAATTGGAGGTCCTTGTCCGCGGAGGAGTACCAATGGCACTCAGAG GGGAGCTCTGGCAAGCATTTGTAGGTGTCAAGGCCCGACGAATGGATAAATATTATCAAGATCTTCTTGCTTCAGAAACTTGCTCACAAAATCATGCTGG TGAAAAATCAGAAAACGGTCCTAAAAGTTCACCAAGAAACCTTGCACCTGGAACTGAAAAATGGAAAGGACAGATAGAGAAGGATTTGCCTCGTACTTTT CCTGGCCATCCTGCCCTGGATATTGATGGCAGAAATGCTCTTAGGCGGATACTTACAGCCTATGCACGGCATAACCCCTCAGTTGGATACTGCCAGGCCA TGAATTTCTTTGCTGCTCTTTTACTACTTCTGATGCCGGAGGAAAATGCCTTCTGGACATTCATGGGCATTCTTGATGATTATTTTGACGGGTACTACTC AGAAGAAATGATAGAGTATGAGGTTGACCAACTTGTTTTTGAAGAGCTTGTGCGTGACAGATTTCCTAAACTAGCCAACCATCTGGACTACTTAGGAGTG CAGGTTTCATCCTTTTCTGGACAATGGTTCCTTTCCATATATATGAATATGCTTCCCTGGGAAAGTGTTCTTCGTGTCTGGGACGTGCTTCTTTTTGAAG GAAACCGTGTCATGCTATTTCGGACAGCACTTGCTTTGATGGAGTTATATGGTCCTGCATTAGTTACAACCAAGGATGCTGGAGATGCAAATACTTTACT GCGATCACTGGCAGATTCAACATTTGATAGCAGTCAACTTGTATTGACAGCTTGTATGGGTTTCCAAAATGTAAATGAAACACGATTATGGAAGTTGAGA AATAAGCATCGACCAGCTATTGTGGCTGCACGTGAAGAGAGAACCAAGGGACTTCAAGCTTCAAAGGATCGTCAGGGATTTCCTTCAAAACTGTATCATT TCAAAACAGATTCCAAGTCAGTGCTGGTAGAAGGAAGAAGGCAAACCAGCAGTGACTTCTCTCACTCCGAGACCGAGTCTAATAATTCTGACGATGCTTT TGCCACTCTGATAGAGAATGGAGAGATGGATAGTACTCCAGATCTTCAAGATCAGGTGGTGTGGTTAAAGGTTGAATTGGGCAAGATACTGGATGAGAAA AGTTCTGCTCTACTGAGAGCCGAGGAATTGGAGACGGCTTTGATGGAGATGGTTATGCATGATAATCGACGGCAACTGAGTGCTAGGGTCGAGCAGTTGG AACAGGATGCTTTGGAGTTGCGGACGGCATTAGCTGAAAAGCAGGAGCAGGAAAATGCCATGATTCAGGTATTAATGAGGGCGGAGCAAGAACACAAAGT AACAGAAGATGCTCGTAGATATGCGGAGCAAGATGCATCTGCTCAAAGATATGCTTGCCTAGTGCTTCAGGACAAGTATGAAGAGGCTATGGCATCACTT GCTGAAATGGAGAAACGAGTAGTTGTTGCCGAATCCGTTTTGGAGGCTACCTTGCAATACCAGTCTGGTCAACTGAAAACACAGTCTTCTCCCAGAGTTC AAAACCCAGACCGATTGCAACGCAGCAACAGCAATCAAGACACGCCATTGCCGACAAGAAAGTCCGGATTATTTGGACTTGGCTGGCGCGACAAAGACAA GGGGAAGACAGGGAATGCTACAGCTAACGGTGAAGAAGAATGCAAGAACGGGAAGCATACCCCGAACGAGGAACAGACTCCTCCGTCTTTCGACCAAAGC GTCTCTCCGGTACAAGTCAAAGAGTGA
AA sequence Show only first row Show all	>Lus10040349 pacid=23173864 polypeptide=Lus10040349 locus=Lus10040349.g ID=Lus10040349.BGIv1.0 annot-version=v1.0 MKDQAKASNPPLGFDLMRDAYGFAVRQQHVQRYREYANIYKEEEEERSDRWESFLDRLGKPARLPVNGSSVEETRALSGEATDDILSDGNHNSDVSHDDL TEEGKQSKANRRIHRIQIWTETRPSLRVIEDMMNVRVKNKANQLMEEHGDMDKKSDLTFKDINSEKGVTEEDSEDEFYDVERSDDPIPDVPPVENVAASV TGATDADEALQEDSSWKEELEVLVRGGVPMALRGELWQAFVGVKARRMDKYYQDLLASETCSQNHAGEKSENGPKSSPRNLAPGTEKWKGQIEKDLPRTF PGHPALDIDGRNALRRILTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWTFMGILDDYFDGYYSEEMIEYEVDQLVFEELVRDRFPKLANHLDYLGV QVSSFSGQWFLSIYMNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDANTLLRSLADSTFDSSQLVLTACMGFQNVNETRLWKLR NKHRPAIVAAREERTKGLQASKDRQGFPSKLYHFKTDSKSVLVEGRRQTSSDFSHSETESNNSDDAFATLIENGEMDSTPDLQDQVVWLKVELGKILDEK SSALLRAEELETALMEMVMHDNRRQLSARVEQLEQDALELRTALAEKQEQENAMIQVLMRAEQEHKVTEDARRYAEQDASAQRYACLVLQDKYEEAMASL AEMEKRVVVAESVLEATLQYQSGQLKTQSSPRVQNPDRLQRSNSNQDTPLPTRKSGLFGLGWRDKDKGKTGNATANGEEECKNGKHTPNEEQTPPSFDQS VSPVQVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	0	1
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	3.2	0.7752
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	3.7	0.7847
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	4.9	0.7694
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	5.5	0.7644
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	7.9	0.7436
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	9.8	0.7438
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	13.9	0.7683
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	15.1	0.7292
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	17.7	0.7476
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	17.9	0.6667

Compare expression of checked genes

Lus10040349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.