Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 537 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 520 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 502 / 1e-177 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 484 / 8e-171 Protein kinase superfamily protein (.1.2) AT2G28590 469 / 8e-165 Protein kinase superfamily protein (.1) AT3G20530 449 / 1e-157 Protein kinase superfamily protein (.1) AT3G24790 440 / 2e-154 Protein kinase superfamily protein (.1) AT3G07070 440 / 7e-154 Protein kinase superfamily protein (.1) AT1G20650 424 / 5e-148 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 420 / 2e-146 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023473 [exp] 731 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 606 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 606 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 542 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 541 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 512 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 509 / 3e-180 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10015756 [exp] 498 / 6e-176 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 456 / 8e-160 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 588 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 578 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 544 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 536 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 536 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 511 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 504 / 3e-178 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 489 / 2e-173 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 476 / 3e-168 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 458 / 2e-161 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040350 pacid=23174166 polypeptide=Lus10040350 locus=Lus10040350.g ID=Lus10040350.BGIv1.0 annot-version=v1.0 ATGGAATGGTTTATCTGTGGTGGCAAGCCAAGCAAAAATGCCAAGAAACTCCCCAGGAAACCCCCCGATGATTCCAATGGAACCAAACACCAGCAGCAGA AGAAGAATCCGCCTGATGATCAGATCCCTTCTTCGTCAGATAAAACCAAGCCAAATGATGCTCAAGAGGCAAATAAGGAGTTTACTCAACAGGAGAAAGA AGGAGGATCAGAACCCATCGCGGCAAATACATTTACATTCCGCGAGTTGGCTGCTGCAACTAAGAATTTTAGAGCAGATTGTCATTTGGGTGAAGGAGGT TTCGGCCGAGTGTATAAAGGGAGTTTAGAGAGCATTAATCGGGTTGTTGCTATCAAGCAACTTGATCGGAATGGCTTGCAAGGAAATCGAGAATTCTTGG TTGAAGTATTGATGTTGAGCTTGCTTCATCATGATAACCTAGTGAACTTGATTGGTTATTGTGCCGATGGAGACCAGAGGCTCTTGGTTTACGAGTACAT GCCTTTAGGATCTTTGGAAGACCATCTACTCGACCTGCCGATTGACAAAAAGCCACTCGACTGGAACACGAGAATGAAAATAGCTGCTGGTGCAGCCAAA GGTCTGGAGTATTTGCACGACAAGGCTAACCCACCAGTTATATATCGGGATCTGAAATGCTCAAACATATTACTCGATGAAGGGTTTCACCCAAAGCTGT CTGATTTCGGGTTGGCGAAGCTGGGGCCCGTTGGGGACAAAACACATGTTTCGACTAGAGTGATGGGTACGTATGGGTACTGTGCACCGGAGTATGCAAT GACGGGTCAGCTAACACTGAAATCGGATATATATAGTTTTGGTGTTGTTCTTCTTGAGATTATTACTGGAAGGAAAGCTATTGACAACTCGAGAGCTGCA GGGGAGCATAATCTGGTTGCATGGGCTAGGCCGTTGTTCAAGGACCGTAAGATGTTTGCACAGATGGCGGACCCGACACTTCAGGGGCATTACCCAGTAA GGGGATTGTATCAAGCTCTAGCGGTAGCAGCAATGTGCGTCCAAGAACAGCCGAATATGAGACCTTTAGTAGCTGATGTGGTTACGGCTCTTACTTACCT TGCGTCACAGAAGTATGATCCGTCAGAGAATCAGGCAGCCCGTGCAGGAGGAGGACGAGGACCGGCTACACCAAGAGCCAGAAGGTGA
AA sequence Show only first row Show all	>Lus10040350 pacid=23174166 polypeptide=Lus10040350 locus=Lus10040350.g ID=Lus10040350.BGIv1.0 annot-version=v1.0 MEWFICGGKPSKNAKKLPRKPPDDSNGTKHQQQKKNPPDDQIPSSSDKTKPNDAQEANKEFTQQEKEGGSEPIAANTFTFRELAAATKNFRADCHLGEGG FGRVYKGSLESINRVVAIKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPIDKKPLDWNTRMKIAAGAAK GLEYLHDKANPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDIYSFGVVLLEIITGRKAIDNSRAA GEHNLVAWARPLFKDRKMFAQMADPTLQGHYPVRGLYQALAVAAMCVQEQPNMRPLVADVVTALTYLASQKYDPSENQAARAGGGRGPATPRARR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	0	1
AT5G15880			unknown protein		Lus10034091 [exp]	1.4	0.8129
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	1.7	0.8044
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	2.6	0.8264
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	4.9	0.7577
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	6.5	0.7663
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	8.4	0.7633
AT5G35080			unknown protein		Lus10008819 [exp]	10.4	0.8005
AT3G51580			unknown protein		Lus10025224 [exp]	14.8	0.7526
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	17.2	0.7574
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	17.6	0.7029

Compare expression of checked genes

Lus10040350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.