Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 62 / 3e-11 HXXXD-type acyl-transferase family protein (.1) AT2G19070 58 / 1e-09 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G24430 55 / 7e-09 HXXXD-type acyl-transferase family protein (.1) AT3G30280 55 / 7e-09 HXXXD-type acyl-transferase family protein (.1) AT5G41040 53 / 3e-08 HXXXD-type acyl-transferase family protein (.1.2) AT3G26040 53 / 4e-08 HXXXD-type acyl-transferase family protein (.1) AT5G57840 53 / 4e-08 HXXXD-type acyl-transferase family protein (.1) AT1G24420 53 / 4e-08 HXXXD-type acyl-transferase family protein (.1) AT4G15390 52 / 6e-08 HXXXD-type acyl-transferase family protein (.1) AT5G48930 52 / 9e-08 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036078 [exp] 211 / 6e-66 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 184 / 2e-55 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 115 / 1e-29 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 107 / 3e-27 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 106 / 2e-26 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 102 / 4e-25 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 98 / 3e-24 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 68 / 3e-13 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 67 / 1e-12 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 70 / 7e-14 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 67 / 6e-13 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 65 / 4e-12 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 63 / 2e-11 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 62 / 2e-11 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 61 / 1e-10 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.008G033500 [exp] 60 / 2e-10 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 59 / 3e-10 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 59 / 4e-10 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.008G034300 [exp] 58 / 9e-10 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10040351 pacid=23174014 polypeptide=Lus10040351 locus=Lus10040351.g ID=Lus10040351.BGIv1.0 annot-version=v1.0 ATGAGATTACGGATTTCCCTCTCCTCCATCCTCTCTCATTTCTACCCATTTGCCGGTAGACTCAACAATGATGATGACTCGTCGCCAGTGATAGACTGTG ATGACATTGGAGTTGTCTACTTGGAAGCCGAAGCAGACCAACTCATGTCTGACTTCCTCGGTGGAGGTACCGGTACCGGCTCCCCACTGGGTAGACAACT GCTTGGTCGTTTGGCTCCTCAACGCCCCAAATTAGATGCTGCCAGTGGTGATGTTCCTCTTGCAAGCTTCCAGACCACGTTGTTCCGGTGTGGTGGTGTA GCCATAGGAGTTTCTTTAAGCCATGTTGTTGCAGACGGTCAGATCTTCAGCATTTTCCTCCAGAAATGGGCCGCCGATAGGAAGAATTATCGGGCAAATG TTTATGCTCACGACAAGGCCGCCTCCTTGTTCCAGAGTAACGACCATGTTTTCAACCTCATAATGTCGTCTTTCGCACAACGCGTGGAGAAAAACCAAAC AACTTGTACTAGTACCAATATCAGTACCGATACTGGTTCAGGTTCAGGTACCGGTACAGTCGTTGCTGAGAGGTATGTGTTTAGTGGGGAGGCATTAGCT GCATTAAAGTCAAAAGCAGTCAAGTCCCCAACCCGAGCCGGACATTAG
AA sequence Show only first row Show all	>Lus10040351 pacid=23174014 polypeptide=Lus10040351 locus=Lus10040351.g ID=Lus10040351.BGIv1.0 annot-version=v1.0 MRLRISLSSILSHFYPFAGRLNNDDDSSPVIDCDDIGVVYLEAEADQLMSDFLGGGTGTGSPLGRQLLGRLAPQRPKLDAASGDVPLASFQTTLFRCGGV AIGVSLSHVVADGQIFSIFLQKWAADRKNYRANVYAHDKAASLFQSNDHVFNLIMSSFAQRVEKNQTTCTSTNISTDTGSGSGTGTVVAERYVFSGEALA ALKSKAVKSPTRAGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10040351 [exp]	0	1

Compare expression of checked genes

Lus10040351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.