Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 70 / 7e-15 HXXXD-type acyl-transferase family protein (.1) AT4G15400 69 / 1e-14 HXXXD-type acyl-transferase family protein (.1) AT5G47980 69 / 2e-14 HXXXD-type acyl-transferase family protein (.1) AT1G24430 66 / 1e-13 HXXXD-type acyl-transferase family protein (.1) AT1G24420 60 / 2e-11 HXXXD-type acyl-transferase family protein (.1) AT5G23970 54 / 1e-09 HXXXD-type acyl-transferase family protein (.1) AT3G30280 52 / 8e-09 HXXXD-type acyl-transferase family protein (.1) AT4G15390 52 / 8e-09 HXXXD-type acyl-transferase family protein (.1) AT5G47950 50 / 5e-08 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036078 [exp] 203 / 1e-64 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 185 / 2e-57 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 137 / 8e-39 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 132 / 3e-37 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 125 / 7e-35 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 122 / 6e-34 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10026736 [exp] 76 / 2e-17 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 71 / 4e-15 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 68 / 4e-14 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 78 / 9e-18 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 77 / 2e-17 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 75 / 7e-17 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 73 / 3e-16 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 73 / 4e-16 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 73 / 6e-16 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 71 / 3e-15 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 70 / 7e-15 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 70 / 7e-15 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 69 / 8e-15 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10040352 pacid=23173909 polypeptide=Lus10040352 locus=Lus10040352.g ID=Lus10040352.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCCATAGATGAAGTAGACGGAGACTACTTTGAGAAGCTAAGAGGTGAGGAAGGGGGTGAGGTGATTAGGAAGTTGGTGGAAGAGAGGAGAA ACTTGAGAGGGTACAGCTTTTCGAGTATGGTGCGGAGCAGGCTAAACCAGGTCGATTTCAGGTTTGGGAAGCCCATCTGGGTTGGGTTTCTAGGGATAAC AGACGACCCACTTGCAGATACTGTGTTCCTGATTGAAACCACGCCGGATGATGATCAAGCTGTGGAAGCATGGGTGAGCTTGGATCAAAAGGAGATGGCT GTGTTCCAGAAGGATGCTGAGTTGCTTCAGTATGCCACTGTTAATCCACCCATCAATCTATCCAACACCTGA
AA sequence Show only first row Show all	>Lus10040352 pacid=23173909 polypeptide=Lus10040352 locus=Lus10040352.g ID=Lus10040352.BGIv1.0 annot-version=v1.0 MKKSIDEVDGDYFEKLRGEEGGEVIRKLVEERRNLRGYSFSSMVRSRLNQVDFRFGKPIWVGFLGITDDPLADTVFLIETTPDDDQAVEAWVSLDQKEMA VFQKDAELLQYATVNPPINLSNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15400			HXXXD-type acyl-transferase fa...		Lus10040352 [exp]	0	1

Compare expression of checked genes

Lus10040352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.