Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45570 310 / 7e-100 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 287 / 5e-91 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 276 / 4e-87 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 276 / 7e-87 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT3G61040 271 / 5e-85 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 266 / 7e-83 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 257 / 2e-79 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 248 / 3e-76 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G22690 237 / 2e-71 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 234 / 7e-71 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027429 [exp] 738 / 0 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 605 / 0 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 602 / 0 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027425 [exp] 554 / 0 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 547 / 0 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 546 / 0 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027430 [exp] 493 / 2e-172 AT2G45550 270 / 2e-85 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10005765 [exp] 413 / 4e-140 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 401 / 1e-135 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 426 / 2e-145 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 417 / 1e-141 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 349 / 3e-115 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 344 / 2e-113 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 340 / 1e-111 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 336 / 3e-110 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 307 / 4e-99 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 293 / 2e-93 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 290 / 2e-92 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 284 / 3e-90 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040353 pacid=23174017 polypeptide=Lus10040353 locus=Lus10040353.g ID=Lus10040353.BGIv1.0 annot-version=v1.0 ATGGCCATCTACATACTCCTCCTTCCACTCATCATCATCGTCGTCATCTTCACCGCCTCGAAAACCCGAAAACTATCTCCGCCGCTCCCTCCGGGACCAA AATCATGGCCAATCATCGGAAACCTCCTAGACATAGGCAAAAACCCACACGTCTACCTCCAATCCTTGTCCAAACTCCACGGTCCGCTCGTCTCCCTACG CCTCGGCTCCCAGCTCCTAATCGTCGCCTCTTCTCCTGCTGCCGCTACCCAAGTCCTCAAAACCCACGACCGCATCCTCTCCGCTAGATTCGTCAAAAAT GCTGTACATTCCGACGACTTAGATCGGAAGGCCATCGTTTGGGCTCCCAATTGCCACGACGGTACCAATTGGAAGACCCTCAGAACCGTTTTCAAAACCA GGCTCTTCTCCTCAAAGGCAATCGAGGCTCAGTCATACATCAAGGAGCGGAAAGCTGCGGAGATGGTTGACATGGTCCGAATTAGAGCCGGGGAGGAAAT CGACTTAGGGAAAGTAATTTACGTCACAGTTTTGAACTCGCTTTTCAATCTCATGTTCTCGAGAGATTGTGTTGTCGGGTTTGAGGAGACGAATGTCAAT TCGCTGATAACGAAGTTGATGGAGACGATGGCGGCTCCTAATGTCGCCGACTTCTTCCCGATTTTGGAGAAGTTGGATCCTCAGCGTCTGAAAACGGCAT ACTCGAGCTGCGTCAAGGAATTGTCTTCTCTTTGGAAGCCTTACGTGAATGAGAGAAGAGAAATTATCCTACGAGGGGAAAGAGCAGAGGATTTTCTTGA TGTCTTTCTGGAAATTGGACTAGACGATGAACAAATCGATTGGTTGGGTCACGAATTAACTGTAGCGGCAACTGATACGACCTCTGTGACGACGGAGTGG GCGATGGCGGAGCTGATCAGAAACAGAGGAGTGATGAACAAGCTTCGCGAGGAATTGAAAACAGAGTTTTCGAACGGAAAGCAGTTGAAGGAATCCGACA TTTATCAGCTCCCTTATTTAACTGCTATTGTGAAAGAAACACTGAGGCTACACCCACCGGCTCCACTACTACTACCCCACCGGGCGTCGGAGACTTTAGA ATTGATGAACTACACGATTCCTGAGGGGGCACGAATCGCCGTCAATGCATGGGCAATTGCTCGGGACTGTTCCATCTGGGGAGATGATGCAGAGTCATTT AAGCCGGAGAGGTTCTTGGGTTCGAATGTGGATTTTCGAGGGAATGATTTCGAGCTGTTGCCGTTCAGTGCGGGGAGAAGGATGTGTCCCGGATTGCCGT CGGTGGTAAGGCATATTCCTTTGCTTGTGGCTAATTTGGTTTGGAGCTTCGACTGGTGCTTGCCGGGCGGAGAGGGTTTGCCGACGGAGATGGATATGAA GGAGAGTTTTGGGCTCTCTTTGCGGAAGGAGCAGCCTTTGGTTCTTATTCCTCGACCGAGTTCGATATTGCAAGATGTACTAATAAAGACATAG
AA sequence Show only first row Show all	>Lus10040353 pacid=23174017 polypeptide=Lus10040353 locus=Lus10040353.g ID=Lus10040353.BGIv1.0 annot-version=v1.0 MAIYILLLPLIIIVVIFTASKTRKLSPPLPPGPKSWPIIGNLLDIGKNPHVYLQSLSKLHGPLVSLRLGSQLLIVASSPAAATQVLKTHDRILSARFVKN AVHSDDLDRKAIVWAPNCHDGTNWKTLRTVFKTRLFSSKAIEAQSYIKERKAAEMVDMVRIRAGEEIDLGKVIYVTVLNSLFNLMFSRDCVVGFEETNVN SLITKLMETMAAPNVADFFPILEKLDPQRLKTAYSSCVKELSSLWKPYVNERREIILRGERAEDFLDVFLEIGLDDEQIDWLGHELTVAATDTTSVTTEW AMAELIRNRGVMNKLREELKTEFSNGKQLKESDIYQLPYLTAIVKETLRLHPPAPLLLPHRASETLELMNYTIPEGARIAVNAWAIARDCSIWGDDAESF KPERFLGSNVDFRGNDFELLPFSAGRRMCPGLPSVVRHIPLLVANLVWSFDWCLPGGEGLPTEMDMKESFGLSLRKEQPLVLIPRPSSILQDVLIKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	0	1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	1.4	0.9065
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	2.0	0.8745
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	3.5	0.8482
AT5G03050			unknown protein		Lus10030557 [exp]	6.9	0.8002
					Lus10041736 [exp]	16.4	0.6750
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	16.9	0.8380
AT3G07200			RING/U-box superfamily protein...		Lus10040641 [exp]	22.5	0.7834
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10042071 [exp]	23.7	0.6085
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	24.5	0.6568
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	27.2	0.7926

Compare expression of checked genes

Lus10040353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.