Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 195 / 1e-56 HXXXD-type acyl-transferase family protein (.1) AT1G24430 167 / 2e-46 HXXXD-type acyl-transferase family protein (.1) AT3G30280 150 / 6e-40 HXXXD-type acyl-transferase family protein (.1) AT4G15390 143 / 2e-37 HXXXD-type acyl-transferase family protein (.1) AT5G47980 142 / 5e-37 HXXXD-type acyl-transferase family protein (.1) AT4G15400 140 / 2e-36 HXXXD-type acyl-transferase family protein (.1) AT5G47950 137 / 1e-35 HXXXD-type acyl-transferase family protein (.1) AT1G24420 134 / 3e-34 HXXXD-type acyl-transferase family protein (.1) AT5G23970 130 / 6e-33 HXXXD-type acyl-transferase family protein (.1) AT5G41040 100 / 2e-22 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036078 [exp] 616 / 0 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 347 / 4e-113 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 341 / 9e-113 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 337 / 1e-110 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 335 / 1e-109 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10040351 [exp] 234 / 1e-74 AT1G24430 79 / 4e-17 HXXXD-type acyl-transferase family protein (.1) Lus10040352 [exp] 189 / 2e-58 AT4G15400 71 / 3e-15 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 198 / 9e-58 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 182 / 2e-53 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 207 / 4e-61 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 200 / 1e-58 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 183 / 2e-52 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 182 / 6e-52 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 180 / 4e-51 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 179 / 1e-50 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 179 / 1e-50 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 179 / 3e-50 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 178 / 3e-50 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 178 / 3e-50 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10040354 pacid=23174230 polypeptide=Lus10040354 locus=Lus10040354.g ID=Lus10040354.BGIv1.0 annot-version=v1.0 ATGGCTTCATATGGTGATCATCATCAGCTTGAAGTGAAGGTGAGATCGAAATCAATCATAAAACCATCTTCTCAAACTCCTCGAAACCTTCGACACTTCA AACTATCTCTTCTCGACCAGATGGTCCCTCCATCGCTCTACATCGACTCAGTCTTCTTCTACCCCAAACCCACTAATACTAATCATGATCGAATCTCAGC CCTACTCCGGGATTCGCTCTCCCACACCCTCTCCCATTTCTACCCTCTTGCCGGCAGGATCCGGCTCAATAATAATCACCACCATGAGTCATCGCAGCCA GTGATAGACTGCAATGACAGTGGAGTGGTCTATTTGGAAGCCGAAGCAGACCAACTCATGTCTGACTTTCTCGGTGGTGGTACTACTCCACCACCGGGTA GACACATATTGGGTCGCTTGGCGCCTCAACGCCCCAAATTTGATGTTAGTAGTGGCGGTGGTGGTGATGTTCCTCTGGCAAGCTTCCAGACCACCGTGTT CCGGTGTGGTGGGATCGCTATAGGAGTTTCCTTAAGCCATCTTGTCGCCGATGGTTCGATCTTCGGCGAGTTCCTCCGGAAATGGGCCGCTGTGGCCAGA CGTAATGGGAAGAGTTATAAGACAAACGGTTATGCTCACGACATGGCTGCTTCTTTGTTTGAGAGGAACACTGACCATGTTTTCAACCTCATAATTCCGC CTTTCATGCAACGTTTGGGGAAACCTGAAACAACTTGTACCAATACGACTACGACTAATCGTACTGGTACTATTGTTGCTGAGAGGATTGTTTTTAGCAG GGAGGCAATTTTTGCCCTGAGGTCAAAAGTCAAAAGCAGTCAAGTCCCCAAACCGAGCCGGACATTAGCCATACAAGGGCTCATCTGGAGCGTTGCTATG AGATCATCAGCCAGTACCACATCCTCGTCCTCCCCCTCGTCTATCGCAATCTCACTAGTCGATTTACGACCGAGAATAAAAACACCTCTGCCCGACTACT CTACCGGAAACCTCTGCTGGGGCAACCTCGCGCGTTATGATCATCACCCCGACAACAACAATACAACAGCTGATCCACCGACGTCTTCGTGGTTGGTTCA GCTGCTGAAGAAGTCTAATGATAAAGTGAACGGAGACTTCATCGAGAAGCTGAGAGGTGAGGAAGGAGATGAGGTGATTAGGAAGTTGGTGGAAGAGAGG GGAAACTTGAGAGATTACACCTTTTCGAGTATGGTACGGGCCGGGTTAAATGAGGTTGATCTCGGGTTCGGGAAGCCTCTTTGGGTTGTGCTTTTAGGGG TGACAGAGGAGCCGCTTGCAGATGTTGTTTTCATGATTGAAGCAACGCCTGATGATGATTCAGTTGAAGCATGGGTGAGCTTGGATCAAAAGGAGATGGC CGTGTTTCGACACGATGTTGAGTTGCTTCAATATGCGACTGTCAATCCACCCATCAATGTGCACCCGGGTGGATCCAATGTTTTCGAAATCTTATCGAGC CGAATTTAA
AA sequence Show only first row Show all	>Lus10040354 pacid=23174230 polypeptide=Lus10040354 locus=Lus10040354.g ID=Lus10040354.BGIv1.0 annot-version=v1.0 MASYGDHHQLEVKVRSKSIIKPSSQTPRNLRHFKLSLLDQMVPPSLYIDSVFFYPKPTNTNHDRISALLRDSLSHTLSHFYPLAGRIRLNNNHHHESSQP VIDCNDSGVVYLEAEADQLMSDFLGGGTTPPPGRHILGRLAPQRPKFDVSSGGGGDVPLASFQTTVFRCGGIAIGVSLSHLVADGSIFGEFLRKWAAVAR RNGKSYKTNGYAHDMAASLFERNTDHVFNLIIPPFMQRLGKPETTCTNTTTTNRTGTIVAERIVFSREAIFALRSKVKSSQVPKPSRTLAIQGLIWSVAM RSSASTTSSSSPSSIAISLVDLRPRIKTPLPDYSTGNLCWGNLARYDHHPDNNNTTADPPTSSWLVQLLKKSNDKVNGDFIEKLRGEEGDEVIRKLVEER GNLRDYTFSSMVRAGLNEVDLGFGKPLWVVLLGVTEEPLADVVFMIEATPDDDSVEAWVSLDQKEMAVFRHDVELLQYATVNPPINVHPGGSNVFEILSS RI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10040354 [exp]	0	1
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	3.9	0.7466
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	4.9	0.8047
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	6.6	0.7649
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	7.1	0.7329
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	11.0	0.7350
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10000670 [exp]	28.2	0.6678
					Lus10008327 [exp]	45.9	0.6240
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	46.3	0.6240
AT5G20610			unknown protein		Lus10025003 [exp]	46.7	0.6240
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	47.1	0.6240

Compare expression of checked genes

Lus10040354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.