Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76820 270 / 3e-84 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 266 / 8e-83 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 265 / 3e-82 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 247 / 3e-76 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 214 / 1e-67 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012856 [exp] 291 / 3e-91 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 288 / 2e-90 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039200 [exp] 280 / 2e-87 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G103600 [exp] 273 / 2e-85 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132100 [exp] 39 / 0.0009 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132300 [exp] 39 / 0.0009 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Lus10040355 pacid=23174178 polypeptide=Lus10040355 locus=Lus10040355.g ID=Lus10040355.BGIv1.0 annot-version=v1.0 ATGTCCAGAACGAGGGTTTCGAAGATCATTGGCCAGTTTCAGGAACAAGGAGTGAACACTGCATTGTACTACAAGAACAAGGAGATGGGGGAAACTTTTA GTATTGTGCCAACAAGCGCCGTTAGGTTCGTCTATCACAGCAGTGGAGAGGGCATTCCGGATTTGTTGTTGCTGTTCGTCCAATGGGCTAAAAAAACCAT GGTTGAGAAACTCACATTCAGCAATCAAATACAGTGTACTGTTCTGGAACTGAAGGTCACTGAGGGGCATGGCACTGCCATTGATGTTGTGCTAGTTAAT GGTGTGCTTCGTGAAGGGGATCAAATTGTTGGTCCCATCGTCACCACTATTAGAGCTCTCTTGACACCTCGTCCAATGAAGGAACTCCGTGTTGAGAGCC CATATTTACACCACACCGAGATTACGGCTGCACAGGGTATCAAAGTCACTGCTCATGGATTGGAGCATGCCATTACTGGAACCGGCCTATATGTCGCAAG TCTCGACAACAATATGAACGATGTTAAAGACTCAGCCATGGAAGACATGAATTCTGTCACAAGCCGTTGCATCGATTGA
AA sequence Show only first row Show all	>Lus10040355 pacid=23174178 polypeptide=Lus10040355 locus=Lus10040355.g ID=Lus10040355.BGIv1.0 annot-version=v1.0 MSRTRVSKIIGQFQEQGVNTALYYKNKEMGETFSIVPTSAVRFVYHSSGEGIPDLLLLFVQWAKKTMVEKLTFSNQIQCTVLELKVTEGHGTAIDVVLVN GVLREGDQIVGPIVTTIRALLTPRPMKELRVESPYLHHTEITAAQGIKVTAHGLEHAITGTGLYVASLDNNMNDVKDSAMEDMNSVTSRCID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76820			eukaryotic translation initiat...		Lus10040355 [exp]	0	1

Compare expression of checked genes

Lus10040355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.