Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10090 261 / 5e-88 ELP6 elongator protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023475 [exp] 432 / 1e-155 AT4G10090 300 / 1e-102 elongator protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046400 [exp] 319 / 6e-111 AT4G10090 320 / 6e-111 elongator protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF09807 [flax] [poplar] ELP6 Elongation complex protein 6
Representative CDS sequence Show only first row Show all	>Lus10040357 pacid=23174009 polypeptide=Lus10040357 locus=Lus10040357.g ID=Lus10040357.BGIv1.0 annot-version=v1.0 ATGGATAATCGAACTCGGAATCTGCTGGACGAAGCTTTAGGACTGGACCAGCAGCTTAGTGAATCGAAGCATGATCATCCACTCGCCGGAAAAGTCCTTC TGGTGGAGGACTGCGTAGAGACAAGCGGCTGCTTCGTGCTTCATCAGCTTATCAAGCGCCTCCTTACTACTACTAATCCCAATTCCTCCAATGTCGTCTT CTTCCTCGCCTTCTCCAATCCCTTCTCCCACTACGATCGCGTTCTCCTGGGAGAGGAAGGAAAAGCTGGCAGAGGCGGGTTGTTTGCATTGTTTGCGAAT ATTACGAAAGCCATGAACGCCTTACCTGAAAGCAACAGGAACTGTCTAACTATCATGATAGATGATGTTTCTCTAATGGAGGTGGCTGCACATGGATCCT CGGATCATGTTCTCGACTTCCTTCACTATTGCCACACCCTAACATCAGAACATGGATGGTCACTGGTCACGCTTAATCATGAAGACATATATTCGAGCAT GGAGAGGCCGATGTTCATTAAGCAGATGGAGTATGCTGCTGATGTTCTGGTAAAAGTGGAACCTTTAGCTACTGGTTTGGCATCTGATGTCCATGGTCAG CTGACAGTGATGAACAGAGGAGTAAGGGATGTGAGAGGAAAGTTGAATAACAGAGTAAGCAATTTCCAGTTCCGGGTCAAGGAGAACATTGTCGAATACT TCTATCCTGGAGCTCGAACTTGA
AA sequence Show only first row Show all	>Lus10040357 pacid=23174009 polypeptide=Lus10040357 locus=Lus10040357.g ID=Lus10040357.BGIv1.0 annot-version=v1.0 MDNRTRNLLDEALGLDQQLSESKHDHPLAGKVLLVEDCVETSGCFVLHQLIKRLLTTTNPNSSNVVFFLAFSNPFSHYDRVLLGEEGKAGRGGLFALFAN ITKAMNALPESNRNCLTIMIDDVSLMEVAAHGSSDHVLDFLHYCHTLTSEHGWSLVTLNHEDIYSSMERPMFIKQMEYAADVLVKVEPLATGLASDVHGQ LTVMNRGVRDVRGKLNNRVSNFQFRVKENIVEYFYPGART

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	2.2	0.8882
AT1G12650			unknown protein		Lus10017837 [exp]	5.2	0.8494
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	5.7	0.8730
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	6.6	0.7991
AT5G63040			unknown protein		Lus10039957 [exp]	12.1	0.7964
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	14.8	0.8437
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	15.7	0.8010
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	15.8	0.7955
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	16.7	0.8101
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	17.1	0.8417

Compare expression of checked genes

Lus10040357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.