Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 307 / 9e-106 TON1B tonneau 1b (TON1b) (.1) AT3G55000 296 / 1e-101 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023478 [exp] 388 / 5e-138 AT3G55005 340 / 4e-119 tonneau 1b (TON1b) (.1) Lus10030297 [exp] 337 / 1e-117 AT3G55005 359 / 2e-126 tonneau 1b (TON1b) (.1) Lus10001983 [exp] 321 / 3e-111 AT3G55000 359 / 3e-126 TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046000 [exp] 338 / 5e-118 AT3G55005 370 / 1e-130 tonneau 1b (TON1b) (.1) Potri.010G215500 [exp] 275 / 5e-93 AT3G55005 357 / 2e-125 tonneau 1b (TON1b) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040360 pacid=23173935 polypeptide=Lus10040360 locus=Lus10040360.g ID=Lus10040360.BGIv1.0 annot-version=v1.0 ATGGACGACTATACGAGAGAGATGATGGACCTCAAGACCCTCGTCACTCGTACACTTGAGAAGAAAGGCGTTCTCGCCAAGATCCGGGCGGAACTCAGAG CAAGTGTGTTCGAAGCAATTGAAGAAGAAGATAAGGTGATTGAGAACGACCAAGACTTACCACCTGCATTACTTGGCAGTTGCAATGATCGTGCAAAGCA ACTCCATGCTTCACCATCAGGGAGGCTGTTAACTGCATTGATTTGCGAGTACTTGGACTGGGCACAACTGAATCATTCATTAAAAGTTTACCTCCCGGAG TGCAACTTGGTAAATGAAGTATCTCCTAGTATGCTTTTCGATTTGTTTTGTTTACTCGTGGTTTGTGAATCGGATTCTGTACTCGGATCGCAGCAAAAGG ATGCCTGGAAAGCCGAGTTGAATGAGTTCAGTAGTAAGAACAAATACGATCTCAACAGGAATGGAGATAGTGGTCCTTTGCTTCTGGATGTACTTGAAGG ATTCTTGAAGTATGAGGATCTAACTCAAGCAAGGGGAAGCGGAAGGAGAGTATCGGTGTCTGGTGCATCTTCTTCATCTGACAGGAGAGCAGGGTCCTCC ATGAGTGGTGGCTATAGAAAAGACGAGTACAATTGGCGGTACGATGGTGACGAGGTGCCAGAGGATGTAAACCGAGCTTCGATTGCACTTGAGAACCTCC AGTTGGACAGGAAGGCTAGGAATCTAACATCCTCGTGGCGGCATGCCGGAGATGGTATGAGCGACGAGGATGGAAGGGGTTGA
AA sequence Show only first row Show all	>Lus10040360 pacid=23173935 polypeptide=Lus10040360 locus=Lus10040360.g ID=Lus10040360.BGIv1.0 annot-version=v1.0 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDKVIENDQDLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHSLKVYLPE CNLVNEVSPSMLFDLFCLLVVCESDSVLGSQQKDAWKAELNEFSSKNKYDLNRNGDSGPLLLDVLEGFLKYEDLTQARGSGRRVSVSGASSSSDRRAGSS MSGGYRKDEYNWRYDGDEVPEDVNRASIALENLQLDRKARNLTSSWRHAGDGMSDEDGRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10040360 [exp]	0	1
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	2.6	0.8885
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	2.8	0.8651
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	4.5	0.8855
					Lus10005391 [exp]	11.0	0.8414
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	13.5	0.8510
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	14.5	0.8689
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	15.0	0.8323
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	16.0	0.8311
AT4G35980			unknown protein		Lus10028436 [exp]	17.3	0.8561
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10042332 [exp]	18.3	0.7879

Compare expression of checked genes

Lus10040360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.