Plant FIBer expression Database

Lus10040361 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13520 729 / 0 peptidase M1 family protein (.1)
AT4G33090 76 / 2e-14 ATAPM1, APM1 aminopeptidase M1 (.1)
AT1G63770 50 / 4e-06 Peptidase M1 family protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023479
[exp]
670 / 0 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
Lus10025002
[exp]
73 / 2e-13 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1)
Lus10026448
[exp]
73 / 2e-13 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1)
Lus10025001
[exp]
70 / 2e-12 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1)
Lus10024641
[exp]
49 / 7e-06 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G045900
[exp]
808 / 0 AT5G13520 965 / 0.0 peptidase M1 family protein (.1)
Potri.010G215700
[exp]
780 / 0 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
Potri.006G224500
[exp]
65 / 5e-11 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1)
Potri.017G039200
[exp]
62 / 8e-10 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1)
Potri.001G102051
[exp]
51 / 7e-07 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.001G101975
[exp]
50 / 4e-06 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.003G129500
[exp]
48 / 1e-05 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF09127 Leuk-A4-hydro_C Leukotriene A4 hydrolase, C-terminal
CL0126 Peptidase_MA PF01433 Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence
>Lus10040361 pacid=23173813 polypeptide=Lus10040361 locus=Lus10040361.g ID=Lus10040361.BGIv1.0 annot-version=v1.0
ATGTCCGCGCGCCACTCCGGCCGCCGCGATCCGGTTGCTGGAGATGTGAGCGGGGAGTGGTTTAGTAAGTTCAATTTTGATTTTCCATCTCTGTGGAATG
GAGATGACAGGGTGGTGGAGGAGTTCGTGATGGAGCAGCCGATTCCGCCGTATCTGTTTGCGTTTGCGGTTGGGGAATTAGGGTTCAGGGAGGTGGGACC
TAGGACTAAGGTTTATGCTGAGAATGTGGACGGGGTGCTGGAATCGGCGGCGAGGGAGTTTGCAGGGACTGAGGAGATGATCCGGCAAGGGGAGAAGCTG
TTTGGGGAGTATCCTTGGGAGAGGTTTGATCTGTTGGTGTTGCCTCCCAGCTTTCCTTATGGTGGGATGGAGAATCCGAGGATGGTGTTCTTGACGCCTA
CTGTGATCAAAGGGGATGCCAGTGGTGCTCAGGTTGTGGCACATGAATTAGCCCATAGCTGGACTGGAAACTTGATTACCAACATTAACAATGAACATTT
CTGGTTGAACGAGGGGTTTACAACGTATGCTGAGAGGAGAATTGTTGAGGTAGTGCAAGGAGAAGAAAGAGCTATATTGAACATGGGAATTGGCTGGAGG
GGTTTGAACGAGGAGATGGAGAGATTTAAGGACAACATGGAGTTTACAAAGCTTAAAACTAATCAGGAAGGAGTTGATCCGGATAACGTGTATTCTCAGG
TTCCTTATGAGAAAGGTTTCCAGTTTCTTGCTCGAATTGAACGTCAGATTGGAAGGCCTGCATTTGATGAGTTTACGAAGAAGTATATCGAGACCTTCAA
GTTTAAGTCAATCGATACTGATACATTTCTTGAATTCCTGAAAGCAAATGTCCCTGGAATAGAGAAAGATGTTGACCTGAAATTGTGGACTGAGGGTACT
GGACTCCCTCCTGATGCATATGAGCCAGTCTCCAACTTGTACAGTCAGATCGTTTCGCTTGCAAATGATTTCAAGAGTGGAAAGATGCCAAAGGAGGATG
AAGTTGCCAATTGGCAAGGACAAGAATGGGAGCTCTACTTAGAGAACCTGCCCAAATGCGTCGAACCCTCTCAGGTTTCGGCCTTGGATGCTCGATACCG
GCTATCAGAATCAAAGGACTACGAGGTGAAAGTAGGATTCTTGCAGATTGCAATTTCATCAAAGTGCAGAGATTACTACCCCGAAGTAGAGAAGACCTTG
AAGGAAGTGGGTAGGATGAAGTATCTCCGGCCGCTCTATACAGCTCTGGTTCAAGGCAGTGGGAAGGAAGAGGAGAAGATCTTGGCGAAAAGGTTGTTCG
CAGAGGCTCGGGAATGCTATCACCCCATTGCGCAAGGCGTTGTGGAATCAATCCTTGCCAAGCACGTCTAG
AA sequence
>Lus10040361 pacid=23173813 polypeptide=Lus10040361 locus=Lus10040361.g ID=Lus10040361.BGIv1.0 annot-version=v1.0
MSARHSGRRDPVAGDVSGEWFSKFNFDFPSLWNGDDRVVEEFVMEQPIPPYLFAFAVGELGFREVGPRTKVYAENVDGVLESAAREFAGTEEMIRQGEKL
FGEYPWERFDLLVLPPSFPYGGMENPRMVFLTPTVIKGDASGAQVVAHELAHSWTGNLITNINNEHFWLNEGFTTYAERRIVEVVQGEERAILNMGIGWR
GLNEEMERFKDNMEFTKLKTNQEGVDPDNVYSQVPYEKGFQFLARIERQIGRPAFDEFTKKYIETFKFKSIDTDTFLEFLKANVPGIEKDVDLKLWTEGT
GLPPDAYEPVSNLYSQIVSLANDFKSGKMPKEDEVANWQGQEWELYLENLPKCVEPSQVSALDARYRLSESKDYEVKVGFLQIAISSKCRDYYPEVEKTL
KEVGRMKYLRPLYTALVQGSGKEEEKILAKRLFAEARECYHPIAQGVVESILAKHV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13520 peptidase M1 family protein (.... Lus10040361
[exp]
0 1
AT5G13520 peptidase M1 family protein (.... Lus10040362
[exp]
1.0 0.8519
AT1G75240 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, hom... Lus10037175
[exp]
8.1 0.8362
AT3G19760 EIF4A-III eukaryotic initiation factor 4... Lus10010206
[exp]
17.0 0.7613
AT5G62390 ATBAG7 BCL-2-associated athanogene 7 ... Lus10031147
[exp]
22.6 0.8302
AT3G17840 RLK902 receptor-like kinase 902 (.1) Lus10041992
[exp]
22.8 0.8004
AT3G03590 SWIB/MDM2 domain superfamily p... Lus10005667
[exp]
23.9 0.8241
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10005891
[exp]
24.4 0.8255
AT3G02710 ARM repeat superfamily protein... Lus10031364
[exp]
28.4 0.8124
AT4G25240 SKS1 SKU5 similar 1 (.1) Lus10031143
[exp]
35.3 0.8019
AT4G10630 Glutaredoxin family protein (.... Lus10033238
[exp]
37.9 0.8177

Lus10040361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.