Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023480 [exp] 188 / 2e-59 AT3G45740 448 / 2e-157 hydrolase family protein / HAD-superfamily protein (.1) Lus10008416 [exp] 132 / 1e-37 AT3G45740 481 / 2e-169 hydrolase family protein / HAD-superfamily protein (.1) Lus10001969 [exp] 76 / 3e-17 AT3G45740 298 / 9e-100 hydrolase family protein / HAD-superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045700 [exp] 152 / 4e-45 AT3G45740 488 / 3e-172 hydrolase family protein / HAD-superfamily protein (.1) Potri.010G216000 [exp] 133 / 3e-38 AT3G45740 466 / 1e-164 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040363 pacid=23174100 polypeptide=Lus10040363 locus=Lus10040363.g ID=Lus10040363.BGIv1.0 annot-version=v1.0 ATGAAACTCAAAATTCATCACAGTCCTCTGGAATACGTGTCCTTTGGGAAACCAAAGGCTTCTGTGTTCAAGAACGCTGAAGCTATCCTGAACCAGCTTC AACCAGCTCATCAATATAGTGACTTCAAAGAATGTGAAGAACCACTGTCCTCATTTCCTCTCCAAACACTTTACATGATTGGCGATAACCCTTACGTCGA TGTCAAAGGTGCTAACCAGGCGGTTCGAATGTCCACTGAGCTGGTTTTCCTGGGGTTTCAGACTGGACGTCCTTGGTTCTCCATCTTAACAAGGACCGGT GTCTTCCGTGACGAACACAACCATACCGAGTTTCCTGCCGATCTGGTTGTTGACACTGTAGAAGATGCAGTAGATTACATTGTGAGGAAGGAAAGCATCT TGTAG
AA sequence Show only first row Show all	>Lus10040363 pacid=23174100 polypeptide=Lus10040363 locus=Lus10040363.g ID=Lus10040363.BGIv1.0 annot-version=v1.0 MKLKIHHSPLEYVSFGKPKASVFKNAEAILNQLQPAHQYSDFKECEEPLSSFPLQTLYMIGDNPYVDVKGANQAVRMSTELVFLGFQTGRPWFSILTRTG VFRDEHNHTEFPADLVVDTVEDAVDYIVRKESIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45740			hydrolase family protein / HAD...		Lus10040363 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	5.0	0.8670
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	7.5	0.8612
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	9.3	0.8561
					Lus10033439 [exp]	9.8	0.8357
AT5G19875			unknown protein		Lus10006311 [exp]	11.1	0.8542
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	11.6	0.8498
					Lus10038619 [exp]	13.0	0.8133
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	13.2	0.7148
					Lus10000169 [exp]	13.5	0.8094
					Lus10020451 [exp]	14.5	0.8484

Compare expression of checked genes

Lus10040363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.