Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39260 950 / 0 binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023481 [exp] 1261 / 0 AT2G39260 1537 / 0.0 binding;RNA binding (.1) Lus10030801 [exp] 128 / 1e-34 AT2G39260 142 / 1e-40 binding;RNA binding (.1) Lus10030802 [exp] 89 / 8e-18 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216100 [exp] 1068 / 0 AT2G39260 1533 / 0.0 binding;RNA binding (.1) Potri.008G045400 [exp] 1063 / 0 AT2G39260 1375 / 0.0 binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04050 [flax] [poplar] Upf2 Up-frameshift suppressor 2 CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Lus10040364 pacid=23174155 polypeptide=Lus10040364 locus=Lus10040364.g ID=Lus10040364.BGIv1.0 annot-version=v1.0 ATGGACCGTCACGAGGATGAAACTCGCACAGGGAGCGGCGAGCCTCATGGCAAGCAAGACGATGAGGAAGCTGTTGCTCGACTTGAGGAAATGAAGAAAT CTATTGAGACGAAAATTGCCCTTCGTCAAAGCAATTTGAATCCGGAAAGGCCTGACTCGGGCTTCCTAAGGACATTAGACTCTAGCATAAAACGCAACAC AGCAGTTATTAAAAAATTAAAGCAGATAAATGAAGAGCAGAGAGAAGTGCTGATGGAAGAGTTGCGGAATGTTAACCTTAGCAAATTCGTAAGTGAGGCA GTGGCCGCTATCTGTGATGTAAAGCTTAGAAGTTCAGACATACAGGCTGCAGTGCAGATTTGCTCGCTGCTCCATCAGAGATACAAAGATTTCTCACCGA GCCTGGCACAAGGACTTTTGAAAGTCTTCTTTCCTTCCAAATCAGGCGAAGACGTGGATGTGGACAAGAATTCTAAGGCCATGAAGAAACGGAGCAGTTT GAAACTCCTATTAGAACTGTATTTCGTTGGGATTCTAGAAGATTGCAGTATCTTTATCAATGTCATCAAAGATCTTACCGGCTTGGAACACTTAAAGGAC CGTGATGCTACTCAAACTAATCTGACATTACTTGCTAGTTTTGCTCGACAAGGGAGGGTGTTTTTAGGGCTTCCATTCTCTGGACAGGAATTCCAGGAAG AGTTTTTCAGGGGACTTAATGTTTTGCCAGAACAGAAGAAAATATTCAAGAAGGCCTTTCATGTGTATTATGTTGCTGTGTCAGAACTTCTCAAGTCTGA GCATGCTTCTCTTCGCCAGATGGAGCACGAAAATGCTAAAATTTTGAATGCTAAAGGGGAGTTGAGTGATGAAAATGCCTCCTCATACGAGAAGCTAAGG AAATCTTATGACCATTTGTACCGCAATGTTTCATCATTAGCTGAAGCCCTTGATCTGCAACCTCCAGTGATGCCGGAGGATGCACACACAACAAGAGTTA CTAGCGGGGAGGATACATCCTCACCTGCTGCTGGAAAAGACTCTTCAGCTCTTGAACCGTTGTGGGATGATGAAGATACCAGAGCCTTCTATGAGTGCTT ACCAGATCTCAGAGCATTTGTTCCTGCTGTTTTGTTGGGGGAGGCAGATGCAAAAGCCAATGAGCAATCTGTGAAGACTCAAGATCAGTCTGCTGAGTCA AGTCTTGAAGCAGATCAAGACCAATCGACACAAGAAATTAAGGAGATTCCTGAAGAATCTGGTGTTCTTGATGAGTCAAAAGGTGTGGAGAAGGGGAAGG AGAAAGAAGAGAAAGATAAAAGTAAGGACATGGAGAAAGAGAAAGGTAATGACAAAGATTCTGAGAAGAAAGGTGAAAATGAGAAGGAGAAGCTCAAAGG TGTGGAAAAGGGGAAGGAAAAGGATAGTAAGGATGCAGAGAAAGAGAAAGGCAAAGAAAAAGATAGCGAGAAGAAAAGTGAGAATGAGAAGGATAAACAC AAAGGAGTCGAAGTGTCAAATCTGGATGCTCTGCTGCAAAGGCTTCCTGGTTGTGTGAGTCGCGACTTGATTGATCAACTGACGGTGGAGTTTTGCTATT TAAATTCGAAGTCAAACAGGAAAAAACTTGCAAGGGCATTGTTTAATGTACCTCGCACATCTTTGGAACTGATACCATACTATTCACGCATGGTTTCCAC TCTGTCAACATGCATGAAGGATGTGCCATCCATGCTATTACAGATGCTGGAGGAGGAGTTCAATTTCTTAATCAATAAAAAGGATCAAATGAACATTGAA ACAAAAAACAGGAATATCAGGTTCATTGGTGAACTATGCAAGTTCAGGATTGCACCAGCTGGCTTGATTTTTAGTTGTTTGAAGACCTGTTTAGATGATT TTACTCATCACAATATTGATGTTGCATGCAATCTTCTTGAGACGTGTGGCCGTTTTCTATATCGGTCCCCTGAAACTACCGTGCGCATGGCCAATATGTT GGAGATACTAATGCGCTTGAAAAATGTGAAAAACTTGGACCCTAGGCATAGCACCCTTGTAGAAAATGCTTACTATCTGTGTAAACCACCTGAGAGATCT GCACGTGTGTCTAAAGTCCGTCCTCCTCTACATCAATACATCAGGAAATTGCTGTTCTCAGATCTGGATAAGTCCTCCATTGAGCATGTACTGAGACAGC TTCGCAAGTTGCCTTGGAGTGAATGTGAAGAATATCTCTTGAAATGCTTTTTGAAGGTTCACAGGGGAAAATATGGACAGATTCACTTGATTGCTTCTCT CACTGCTGGGCTGAGTCGCTATCATGACGAGTTTGCAGTTGCTGTTGTTGATGAGGTTTTGGAGGAGATCAGGCTTGGTCTAGAATTGAATGACTATGGA ATGCAACAGAGACGCATTGCACATATGCGTTTCTTGGGTGAGCTTTACAACTATGAGCATGTGGATTCATCAGTGATTTTCGAGACTTTGTATCTGATCG TAGCATTTGGTCATGACACATCAGAGAGAGATGTGCTGGATCCACCTGAGGATTGCTTCCGCATCAGGATGATTATTACCCTCCTTGAGACATGTGGACA CTACTTTGATCGAGGTTCTTCAAGGAGGAAGCTTGATCGATTTCTGTTACACTTCCAGCGTTACACTCTCAGTAAAGGTTCCCTGCCTCTTGATATTGAG TTTGACTTGCAGGACTTATTTGCTGAATTGCGCCCTAACATGATCCGTTACTCCTCAATTGAGGAAGTTAACGCGGCTCTTTTAGAACTTGAACGTCATG TTTCAACTGAGAAGAATAGCAGTGAAAAGCATTCTGGGACTGAAAAGCTTCGCAACAGGACTTCTGCCAATGTCCCCTCTGCTAATGGGGAAATTCTTGC AGATGGAGATGATGAAAATGGCAGGTTACATGAGAAAGTTGTGGATAATATCACTGATTCAGGCAGTGACACAAATGATCATGAGGGACATGATGATGAG TTGGATGAAGAAACCCATGATGATGGTGACACAGATGATGAGGATTATGACCACAGGGGTGTGCCTGGTTCTGATGAGGATGATAAAGTCCGAATCAGAC AAAAAGTAGCCGAAGTGGACCCTGAGGAGGCTGCAAGTTTTGAACAGGAGTTAAGAGCTGAAAGCATGGAGCAGCGCAGGCTGGATTTACGGGGTCGACC AGCACTCAACATGGTAATACCGATGAACTTGTTTGAAGGATCCACCAAGGATCATCATGGAAGAGGGACTGGAGGTGAAAGTGGTGATGAGACATTGGAT GAGGAAGCTGGAGGCGGCAAGGAGGTCAAGGTCAAAGTACTTGTTAAACGTGGTAACAAGCAACAGACAAAGCAGATGTTCATTCCTCGTGATTCATCTC TTGTCCAGAGCACTAAGCAAAAGGAAGCAGCGGAGCTTGAAGAGAAAAAAGATATCAAAAGGCGTGTCTTGGAATATAATGAGAGGGAAGAAGAGGAGAT CAACGGTTTGGGGACCCAGACGCTAAATTGGTTGCCTCCTGGACATGGCAGAGCAGGTGGCCGGAGTGGCTCATGGGAAGGAAGTAGTGTAAGAGGTGGT GGAGTACGCTTTCGGCTTCATCATTCTGGTGCTGGAGCCTATCATGGAAGGCGAAGGTGA
AA sequence Show only first row Show all	>Lus10040364 pacid=23174155 polypeptide=Lus10040364 locus=Lus10040364.g ID=Lus10040364.BGIv1.0 annot-version=v1.0 MDRHEDETRTGSGEPHGKQDDEEAVARLEEMKKSIETKIALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREVLMEELRNVNLSKFVSEA VAAICDVKLRSSDIQAAVQICSLLHQRYKDFSPSLAQGLLKVFFPSKSGEDVDVDKNSKAMKKRSSLKLLLELYFVGILEDCSIFINVIKDLTGLEHLKD RDATQTNLTLLASFARQGRVFLGLPFSGQEFQEEFFRGLNVLPEQKKIFKKAFHVYYVAVSELLKSEHASLRQMEHENAKILNAKGELSDENASSYEKLR KSYDHLYRNVSSLAEALDLQPPVMPEDAHTTRVTSGEDTSSPAAGKDSSALEPLWDDEDTRAFYECLPDLRAFVPAVLLGEADAKANEQSVKTQDQSAES SLEADQDQSTQEIKEIPEESGVLDESKGVEKGKEKEEKDKSKDMEKEKGNDKDSEKKGENEKEKLKGVEKGKEKDSKDAEKEKGKEKDSEKKSENEKDKH KGVEVSNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLARALFNVPRTSLELIPYYSRMVSTLSTCMKDVPSMLLQMLEEEFNFLINKKDQMNIE TKNRNIRFIGELCKFRIAPAGLIFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERS ARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEEYLLKCFLKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYG MQQRRIAHMRFLGELYNYEHVDSSVIFETLYLIVAFGHDTSERDVLDPPEDCFRIRMIITLLETCGHYFDRGSSRRKLDRFLLHFQRYTLSKGSLPLDIE FDLQDLFAELRPNMIRYSSIEEVNAALLELERHVSTEKNSSEKHSGTEKLRNRTSANVPSANGEILADGDDENGRLHEKVVDNITDSGSDTNDHEGHDDE LDEETHDDGDTDDEDYDHRGVPGSDEDDKVRIRQKVAEVDPEEAASFEQELRAESMEQRRLDLRGRPALNMVIPMNLFEGSTKDHHGRGTGGESGDETLD EEAGGGKEVKVKVLVKRGNKQQTKQMFIPRDSSLVQSTKQKEAAELEEKKDIKRRVLEYNEREEEEINGLGTQTLNWLPPGHGRAGGRSGSWEGSSVRGG GVRFRLHHSGAGAYHGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	2.0	0.8645
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	2.8	0.8596
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	6.2	0.8214
AT5G49960			unknown protein		Lus10041011 [exp]	7.1	0.8426
AT5G22450			unknown protein		Lus10020607 [exp]	7.9	0.8394
AT1G23230			unknown protein		Lus10016701 [exp]	7.9	0.8519
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	8.2	0.8484
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	9.8	0.7687
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	11.0	0.8406
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	11.8	0.7905

Compare expression of checked genes

Lus10040364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.