Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54970 320 / 4e-105 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT2G37060 213 / 3e-66 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G38880 211 / 8e-66 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT3G53340 205 / 5e-63 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT4G14540 178 / 5e-53 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 175 / 2e-51 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G13570 164 / 4e-47 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G47810 152 / 2e-43 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT1G21970 149 / 4e-41 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT5G47670 144 / 6e-40 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023483 [exp] 315 / 4e-105 AT3G54970 230 / 7e-75 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10023484 [exp] 300 / 1e-99 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10015058 [exp] 206 / 3e-63 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001751 [exp] 177 / 6e-52 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 177 / 7e-52 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 174 / 6e-51 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023167 [exp] 172 / 1e-50 AT2G37060 172 / 2e-55 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10016616 [exp] 172 / 2e-50 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10036637 [exp] 167 / 2e-48 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216500 [exp] 382 / 4e-129 AT3G54970 338 / 3e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Potri.008G044800 [exp] 259 / 8e-84 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 258 / 2e-83 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 215 / 8e-67 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.016G006100 [exp] 178 / 1e-52 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 175 / 1e-51 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 174 / 3e-51 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 173 / 9e-51 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 168 / 2e-48 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 166 / 7e-48 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone CL0012 [flax] [poplar] PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10040366 pacid=23173968 polypeptide=Lus10040366 locus=Lus10040366.g ID=Lus10040366.BGIv1.0 annot-version=v1.0 ATGACAGAGTGCAGGTTTCTCTTCAGCAATGGCGTGATCTCGTCGTCGGCCGACGTACCTCCGGTAACTACGCTCCTCCAGTCACACTCTGGAGCGTACA CGACGACGCGGACCCACGGCGACGGTGCGTGTATTTTGTTATGGGAGAGGCATCTACGGCGGCTATCAAGCTCCGCCCGAATTCTGTTATCTGAAAAGCC ACAACTTCTCTTCAAATCGGGACTTGGCCGATCGTCGCCGTGGATTGAGCCGACGGCGTTGGGTTCTGCTGTTGAGTCGCTGGTCAATGACGCCGTGAGC CAAGTGCTTCCAATTGCGTTGAGAGACGGTCGGAGGAAGGATGGAGAAGAGCTGGCGATCACGGCTCTGGTTAGTGGGAATGATACCAAGAATGTGGATG GAAGACGCAGCGTGGTTGAGATGCTGGACGTGTACGTACATCTTGGTGGCTACGTTCCTCCGGTGTTCGGTGCATCAGGGACTGCTGCGAGATTGGCTGT TGTTGGTGGACGAAGATCCTTGGCCGAAGCTAAGTATTCGGATTGGGTAAGGCTAAGGAAGCCACTGGAGAGATTGAGGTCTCCTTTGACGACAGAGCTC CTGTTGTCTAACGATGGCGATCATTTGCTTGAAGGCTTCGTCACAAATTTCTTCGTTGTTTGCTGCAAGGGGTCTAGTTCTTTCCAGGAAGACAATGGAG TTGTTGAAAATGCATATCCTTTTGAAGTGCAGACAGCTCCCGTTGCTGATGGTGTTCTTCCAGGAGTAATTCGTCAACTAGTCATCGAAGTGTGCTTAAG CAAGGGGATTGCAGTTCAAGAAGTTTCCCCGTCATGGTCAAAGCGTGAATTTTGGCAGGAAGCATTTGTTACAAGTAGCCTGAGAATCGTGCAGCACGTG GAAAAAATCCAGCTCCCACGTTCATGGGAATCATTAGAACAGAAATCTCTAGAAGAGATCTCGTGGGACGAAAAGCAATTTAAGACAAATCCTGGGATGA TCACGTCGATAATTCAGATGGCAGACAACCCAGGGAGTCCAGCAGGAGGGAGCCATGACAGTGGGGGAGAGCATAGCCCACACTCTGGAGTGAGGGAGCA GGACAGGTTCCTCCCTATCGCCAATATAAGCAGGATCATGAAGAAGGGCTTGCCTGCTAACGGCAAGATTGCCAAGGAAGCTAAGGATACTGTTCAGGAG TGTGTATCCGAGTTCATCAGTTTCATCACTAGCGAGGCGAGCGATAAATGTCAAAAGGAGAAAAGAAAGACGATCAATGGGGATGATCTGCTATGGGCGA TGGCAACATTAGGCTTTGAGGATTATATTGAACCACTCAAGGCGTACCTAGCTAGGTACAGAGAGGGAGATGCTAAAGGTTCTGCTAGGGGCGGAGAAGG ATCTTCTGCTAAAAGGGATCCCATGGGCGGCAACGGCATGCCTGCTCAGAATACTCAGTGGCACAACAACAAATTACATATGTTTTATTATTTGTGGTTT TCGAGCAAAACATATGTTGCATTATTGAGTCAACTAACGAGTCATATACTCGAGTTGGCTCTCGAGCCCGAGCTCGAGCTAGCTCGCAGGCATACCGAGT CTAACATACCTTGGCTCAAGCTTGGTTCATTTAAAATCGAGCCGAGTCACAAACGAGCTTTTCCCGAGTCGAACACTGAGCCGAACGCGAGCGGCGTGGT TCATCAACAACTCTACATGTCAGGAACCGTTGAATCTCAATAA
AA sequence Show only first row Show all	>Lus10040366 pacid=23173968 polypeptide=Lus10040366 locus=Lus10040366.g ID=Lus10040366.BGIv1.0 annot-version=v1.0 MTECRFLFSNGVISSSADVPPVTTLLQSHSGAYTTTRTHGDGACILLWERHLRRLSSSARILLSEKPQLLFKSGLGRSSPWIEPTALGSAVESLVNDAVS QVLPIALRDGRRKDGEELAITALVSGNDTKNVDGRRSVVEMLDVYVHLGGYVPPVFGASGTAARLAVVGGRRSLAEAKYSDWVRLRKPLERLRSPLTTEL LLSNDGDHLLEGFVTNFFVVCCKGSSSFQEDNGVVENAYPFEVQTAPVADGVLPGVIRQLVIEVCLSKGIAVQEVSPSWSKREFWQEAFVTSSLRIVQHV EKIQLPRSWESLEQKSLEEISWDEKQFKTNPGMITSIIQMADNPGSPAGGSHDSGGEHSPHSGVREQDRFLPIANISRIMKKGLPANGKIAKEAKDTVQE CVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLARYREGDAKGSARGGEGSSAKRDPMGGNGMPAQNTQWHNNKLHMFYYLWF SSKTYVALLSQLTSHILELALEPELELARRHTESNIPWLKLGSFKIEPSHKRAFPESNTEPNASGVVHQQLYMSGTVESQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	0	1
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	6.0	0.8772
AT4G17010			unknown protein		Lus10001160 [exp]	7.1	0.8728
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	8.5	0.8536
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	9.2	0.8582
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	9.3	0.8740
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	12.2	0.8530
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	12.4	0.8635
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	16.2	0.8481
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	18.5	0.8037
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	20.4	0.8544

Compare expression of checked genes

Lus10040366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.