Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54760 210 / 4e-56 dentin sialophosphoprotein-related (.1.2) AT3G09670 209 / 4e-56 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 179 / 9e-47 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 143 / 3e-34 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 103 / 5e-22 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 103 / 8e-22 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 98 / 1e-20 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 77 / 1e-13 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT3G61740 46 / 0.0003 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023486 [exp] 2250 / 0 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 198 / 3e-52 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10012010 [exp] 196 / 4e-52 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10014546 [exp] 161 / 8e-40 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 158 / 6e-39 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 109 / 1e-23 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 108 / 3e-23 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 77 / 9e-14 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10033036 [exp] 71 / 2e-13 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216900 [exp] 716 / 0 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 713 / 0 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 335 / 4e-97 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 226 / 2e-62 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.004G130600 [exp] 157 / 1e-38 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 107 / 5e-23 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 106 / 6e-23 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.013G018700 [exp] 103 / 5e-22 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 53 / 3e-07 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10040367 pacid=23173868 polypeptide=Lus10040367 locus=Lus10040367.g ID=Lus10040367.BGIv1.0 annot-version=v1.0 ATGGATGGGGGCGAGGATAAGGATGCCAAGGGTTCATCTAGTACAGTCACAGTTACTGAGCCAGTAGCTGCTAGTGGCGCTGATAGTAAGGAACTCTCTG CTGCTGCTGTGGCTAACGTAGAGGAATCAAAGTCGAGAGTAGTACTTGGGTTTGATGGGCATGAAGTGGATTTGGAGAAAGATGCAGAAGAAGAAGAGGA AGGAGAAGGTGTGACTGGTTCAGTTGATGACTTGGGACCTGTGGAGGACACGGGTGATGAGACCTGGAGTCCGATAACTAAGAGTGCCGAGTGGAACTCG TTGGAAGAGGATGTAGGTAAGGATGGTGAGGGCCAAGTTGGTGAAGAAGCTTTACTTGAAGGTGGAGAAGATGATAATCCTAGTGGAGGGTTGAGAAATA GTGGCGAAGAAGGTGCCTCTCTAAAAGAGAGTTCTGTAGATGAGGAAAGACTTGTGACTGATGTCTCCACGGGTGGGGATACCGAAATTGTAGAGGGTTC GTCAGTTGTGGAGACTGTAGTCACGGAAACGGAAACAGTTGTTGAGACTGTAGTCACAGAAACGGTTGTGGAGACTGTAGTCATGGAAACCCAAGTTGCT GATGATTCCAAAGATGGTGGAGATGGAGACACACATGTTATGGATAGTTTTGAGGATGCGGAACCACCTCGGTTTGTACCGGTTTCAGAAGGTGGGGATA CCCAAATATTGGATGATTCTGGTGATGGCAATGCTGCATTGAATGATGCATCTGCTGAAGAGGAAACACTGGTTGTTACGAGTTCACTGAATCAGGATAC CCAAGTTGTAGAGGTTCCTGGTATCGAAGACCTAGATGGTTCTAGGGACGAGGAAACCCTCGATACCCATGATTCTGAGGACAGGGAAACTCAGGTTTTT GTGGATGGTTCCAAGGATGGGGAAAATGTGCTAGGTTCGGTGGATGAAGATACACCGGTCGTAGAGGACTCTATTGGCGACGACATTGACTGTTGCCGGG AGGGTGACACCAAAGTTAATGATGGTCCCGAGCATGCAGGAGCTCAGATTTTACAAGATTCAGTGGGTAAGGATGCCAGTCTCGTGGATTGTTCTAGGGA TGGGGATGCCGAAGTTAATGATCTTCCTAACGATGGAGTAACACAGGTTACACACAGTTCATCTGATGATACCCAAATCATAGAGGACCCTGATACTCAA GATGTGGATGTTTCAAAGAGTGTGGAAACTGAAATAAGTAATGGTTCCAGTGATCATGAGAATCAAGTTGCTGATGATTCGCGGGATGTGGAAACTGAGG TTGTCAACGGTTCTGTACATGCTGAAGAAAAAGTTGGAGTTCCAGATACATCTGCCGTTTCAAAAGATGAGAATGTGGAGAGAGGTTTAACAGAGGAAGT TGCTCCTATTCCAACTGAGGATCTAAATTCTCAGGAAGTCAATGCACTGGAGCATGACATCAACGATCCAAGCATGTCTAGTGGTTTGGAGGACTCTTGT GGGGCAAAGAATCAAGTTTCTGCTGCTATTGAGGAAGCCGAGTTGGTTGAAGAGCAGCCAATGGAAACTGTTGAAACTAAAGAAGATGTTTCTCTATATT CAGAGTTTAAACTGGAATCTTCTTTCCGGCAGGAGGCACATGTGGTGATGGTCAGTGATGACGCTTCATGTCCTCCACATGAAGCAATCAGTGGTGATCC TGTGGAGAAAGTACCTAGAATTGATGCTCTAGAGGGAATGACATCCAGTTCTGTCAATGATTCAGCTCTGATGGAGAAAAATGAGATAGAGTATCCGAAC TGTGAAACTCTTGAAAAAGTAATGCAAGTTTCTGTTCAAGGGAACATTGCATCAGTGGACGATGGAGAAATTACTTGTCCGAACATTGAAGGTATGGATG CTGATGCTTTTAATGAAAATTTTTGCTTTTCAGTGGAAGAACTCCAAGCATCAGGTGAGACAGTCAACGGGAGCACTGAACATCACTATAATGCACTTGC AGATCTTCCATCTTTCTCTCAACCAACTGATGTGTTTATTGGAGGTGAATTTGCTGGTACCATGGAAGAGAAGGTATTTCCGTTTTCCGGAAAAGAACAC TTCATACACCAGTCTGTCTCTTTTGGTCCTATTAGGGATAACTCAAACGTAGAGCAAGTAATGATAAATGGCATACAAATTACTTATGCTAAACAAACTT GTCTGCAGAAACAGCAGGAAACTAGAGTTGCAGCTGGCAAGCTAGTGGAGGCAGATAAAGAGGGTGTAGCAAATGGTAGCATTCATTCTCCAGATTCAAC TTCTTCTTTCCATTCTACGCAGGCAGTTGCTGGAGACGATGTTGCCGAAATGGATCACATTGTTGGTTTAGATGCAAGAGCCTCTGGAGACGATCAGTCA GCTTCCTTCCACAATGAAGTTTTAGCTTCCACCACCGGTTTCACAAAAGCCTCTGTGAACAATGCAGAGTTGGCTGTAGAGACCAGTCTTCTTGATGTGA AAGAAAGGGGAGTTGATACTACTGAGGAGAAATCTCCTCAATGGGCTAATTTACACTGGGGAAGCTTTGCAAATGCACAGCAAGCTAAATATCAGCTGCC ATCAGACTTCGATGGTGAATTCTGTGTATCTGATTTGGTTTGGGGAAAAGTTAGGAGTCATCCTAGGTGGCCTGGGCAGATATTTGACCCTGCAGATGCC TCTGAGCAAGCATTGAAGTATCAGAAGGACAGTTTTTTGGTAGCATATTTTGGGGACCGTACATTTGCATGGAATGAAGCACATCTTTTAAAGCCATTTA GATCCCATTTCAGTCAGTCAGAGAAGCAAAGCAATTCAGAAGCATTCCAGAATGCTGTTGATTCTGCTTTGGAAGAAGTTTCCAGGCGAGTCGAAATGGG TTTGGCTTGCTCTTGTGTGCCAAATGAAGATAGGGACAAAATCGAATTAGAGCTTGTTGGCAATGCCGGAATCCGAGATGAAGCCCTCAAAAGAGGTGAC TTGAACATATCTAGAACTGCAGAGATGTTTGAACCTGTCAATTTGATTAATTATGTGAAATCTCTGGCGCAATCCCCAGCTGCCGGGGCTGATCGTGTAG AGCTCGCAATTCTAAGGTCTCAGTTGTTCTCCTTCTATCGTTTAAAAGGCTATTCGCCGCTGCCTGAGTTTCAGTGCTTTGGTGAGTCGTTGGAAGATTC TGAGGCAATTAATCAGGCCGGGTCTGCTTCTGAAGATGACTTGCAACGTTCCACTTTGCCGAATTCCCAGACTCAAAGACCTGCTTATCATAAACGTAAA CATAACTTGAAGGATGGTGTTTATCGTGGTAAAAAGTTTAAAAGCTCAACCGTTTTGATGGATGACTCGTGGGATTCCGTAGAGGTTGAAGTGGGAGCTG ATGCAAAGAGACGTAAGGGTTCTGATCCTTTTTCCGATGGGTCTGCTGCGCTCGAAGAGGTAAAAACGATATCTCTCGCGAAAATATCGACTGCTCCGAA GCCTTCCTTTAGGATCGGCGAATGTATTCGGCGGGCAGCTAGTCAAATGACAGGGTCGCCCTCTATCCTGAAGTCAAACAGCCAGAAGTTAGAGTTTGAC GATGAATATGACTATAGCATGCCACCGTGTGACGAGGGTGAAAATAACAGCATGGCGTCTCCGGCAGGGAATGCATCTATAGACGAGTTGCTATTGCAGC TTCAGTCAGCAGCACGGGATCCTCTCCAAAGATCTAGTCTTTTCAATGTCGTTGGGTTCTTCTCCGAGTATAGAAACTCTGTGGTAGTTGACCAGCAAGA TGTTGTGCTGGTTGATAAGAGGAGGAAAGTGTTTCATTCGGTTGGCAATTCGGAAACATACGAGTTTGTGGATATGAACGACACTTACTGGACCGACAGG GTGATTGAAAATGGTTCGGAAGAGAAGCCTACTCGGACCGACGGGGTTGTTGAAAATGGTTCGGAAGAGAAGCCTACTCGAAAGAGCAAAAAACGGGAGA ATCTATTCGTACCGGCCGGTCTCGATAAACCGGTTCAGAAGTCAAATGCCAGGAAACGATATTCCGATGGCAACAACTTCAACGTGTTGCAGGAAAAACC ACCTGGTTACGTGGATGCCAAAGCACCGGCGGAGCTTGTAATGCATTTCCCGGTGGCGGATTCCGTTCCTTCCGAGATGAAACTGAACAAGATGTTCAAA TGTTTTGGACCGATAAAAGAATCCGGGACGGAGGTTGATCGAGATACTAACCGCGCAAGGGTGGTGTTTAGGCATTCGTCTGATGCAGAGACTGCTTATG GTAGTGCTTCGAAGTTCAACATTTTCGGGTCGTTGCTTGTAAATTACCAGCTCAACTATACCATATCCGTGCCGTTCAAATCTGAACCAATCTCCATTAC TCATGGAGACGAAGATGGAAATGTCTTTCTTCAATACTGA
AA sequence Show only first row Show all	>Lus10040367 pacid=23173868 polypeptide=Lus10040367 locus=Lus10040367.g ID=Lus10040367.BGIv1.0 annot-version=v1.0 MDGGEDKDAKGSSSTVTVTEPVAASGADSKELSAAAVANVEESKSRVVLGFDGHEVDLEKDAEEEEEGEGVTGSVDDLGPVEDTGDETWSPITKSAEWNS LEEDVGKDGEGQVGEEALLEGGEDDNPSGGLRNSGEEGASLKESSVDEERLVTDVSTGGDTEIVEGSSVVETVVTETETVVETVVTETVVETVVMETQVA DDSKDGGDGDTHVMDSFEDAEPPRFVPVSEGGDTQILDDSGDGNAALNDASAEEETLVVTSSLNQDTQVVEVPGIEDLDGSRDEETLDTHDSEDRETQVF VDGSKDGENVLGSVDEDTPVVEDSIGDDIDCCREGDTKVNDGPEHAGAQILQDSVGKDASLVDCSRDGDAEVNDLPNDGVTQVTHSSSDDTQIIEDPDTQ DVDVSKSVETEISNGSSDHENQVADDSRDVETEVVNGSVHAEEKVGVPDTSAVSKDENVERGLTEEVAPIPTEDLNSQEVNALEHDINDPSMSSGLEDSC GAKNQVSAAIEEAELVEEQPMETVETKEDVSLYSEFKLESSFRQEAHVVMVSDDASCPPHEAISGDPVEKVPRIDALEGMTSSSVNDSALMEKNEIEYPN CETLEKVMQVSVQGNIASVDDGEITCPNIEGMDADAFNENFCFSVEELQASGETVNGSTEHHYNALADLPSFSQPTDVFIGGEFAGTMEEKVFPFSGKEH FIHQSVSFGPIRDNSNVEQVMINGIQITYAKQTCLQKQQETRVAAGKLVEADKEGVANGSIHSPDSTSSFHSTQAVAGDDVAEMDHIVGLDARASGDDQS ASFHNEVLASTTGFTKASVNNAELAVETSLLDVKERGVDTTEEKSPQWANLHWGSFANAQQAKYQLPSDFDGEFCVSDLVWGKVRSHPRWPGQIFDPADA SEQALKYQKDSFLVAYFGDRTFAWNEAHLLKPFRSHFSQSEKQSNSEAFQNAVDSALEEVSRRVEMGLACSCVPNEDRDKIELELVGNAGIRDEALKRGD LNISRTAEMFEPVNLINYVKSLAQSPAAGADRVELAILRSQLFSFYRLKGYSPLPEFQCFGESLEDSEAINQAGSASEDDLQRSTLPNSQTQRPAYHKRK HNLKDGVYRGKKFKSSTVLMDDSWDSVEVEVGADAKRRKGSDPFSDGSAALEEVKTISLAKISTAPKPSFRIGECIRRAASQMTGSPSILKSNSQKLEFD DEYDYSMPPCDEGENNSMASPAGNASIDELLLQLQSAARDPLQRSSLFNVVGFFSEYRNSVVVDQQDVVLVDKRRKVFHSVGNSETYEFVDMNDTYWTDR VIENGSEEKPTRTDGVVENGSEEKPTRKSKKRENLFVPAGLDKPVQKSNARKRYSDGNNFNVLQEKPPGYVDAKAPAELVMHFPVADSVPSEMKLNKMFK CFGPIKESGTEVDRDTNRARVVFRHSSDAETAYGSASKFNIFGSLLVNYQLNYTISVPFKSEPISITHGDEDGNVFLQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10040367 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	2.4	0.9553
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030864 [exp]	3.2	0.9279
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	3.9	0.9357
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	4.0	0.9519
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	6.1	0.9043
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	6.3	0.9340
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	9.5	0.9303
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	11.8	0.9050
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	15.6	0.9247
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	16.1	0.9325

Compare expression of checked genes

Lus10040367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.