Plant FIBer expression Database

Lus10040372 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35830 197 / 5e-65 unknown protein
AT2G35820 194 / 4e-64 ureidoglycolate hydrolases (.1)
AT2G35810 192 / 5e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023491
[exp]
202 / 9e-68 AT2G35810 177 / 8e-58 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G217500
[exp]
200 / 3e-66 AT2G35830 233 / 6e-79 unknown protein
PFAM info
Representative CDS sequence
>Lus10040372 pacid=23174222 polypeptide=Lus10040372 locus=Lus10040372.g ID=Lus10040372.BGIv1.0 annot-version=v1.0
ATGGAATATTCAACAGCCGGCGAAGTGAAGGAGGTGAAGCTGAAACCAATCGAAGCAACCCCGGAGAACTTCAAAGACAACGGCCAGGTAATCGGACCTT
CACCGGACGGGGAAGAATTCGGTCCACAAGACGCCCAGCTAAACCTGACCGAAGGAACTCCGCGTTTCTACATAATGAAGCTGACCAACCGCCCGCTCCA
ATTCGCCACAATCACTCACCACGCCAAGGTAACGCAGTGCCTCGGATCCAGCAGCGGCGGAGCCTGGTACCTTGGAGTCGCGAAACCGTCGACCGGGGCC
TCGGCGGCGGAGGGAGTGAAGAAGAAGAGATCCAATTCCGGCCATACGTATTTAGCTCCGGAGATTGACGACGTTCGGGTGTTTAGGTTCAGCGGGCCGA
CGTTCGTGAAGCTGGAGAAGGGGACGTGGCACGCCGGGCCGCTGTTCGAGGGAGAATCCATGGATTTCTACAATCTGTAA
AA sequence
>Lus10040372 pacid=23174222 polypeptide=Lus10040372 locus=Lus10040372.g ID=Lus10040372.BGIv1.0 annot-version=v1.0
MEYSTAGEVKEVKLKPIEATPENFKDNGQVIGPSPDGEEFGPQDAQLNLTEGTPRFYIMKLTNRPLQFATITHHAKVTQCLGSSSGGAWYLGVAKPSTGA
SAAEGVKKKRSNSGHTYLAPEIDDVRVFRFSGPTFVKLEKGTWHAGPLFEGESMDFYNL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35830 unknown protein Lus10040372
[exp]
0 1
AT5G44080 bZIP Basic-leucine zipper (bZIP) tr... Lus10018857
[exp]
7.1 0.9206
AT1G28330 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1,... Lus10015418
[exp]
9.5 0.9159
AT5G67360 ARA12 Subtilase family protein (.1) Lus10018702
[exp]
10.6 0.9255
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Lus10016657
[exp]
17.7 0.9229
AT5G18840 Major facilitator superfamily ... Lus10033995
[exp]
26.5 0.9124
AT5G53160 RCAR3, PYL8 PYR1-like 8, regulatory compon... Lus10039335
[exp]
28.2 0.9184
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Lus10012009
[exp]
30.6 0.8644
AT1G70460 AtPERK13, RHS10 proline-rich extensin-like rec... Lus10030879
[exp]
37.8 0.9129
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10022616
[exp]
39.0 0.9102
AT5G01950 Leucine-rich repeat protein ki... Lus10035605
[exp]
43.2 0.9002

Lus10040372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.