Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 293 / 2e-103 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023492 [exp] 338 / 8e-121 AT3G52300 295 / 8e-104 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023337 [exp] 311 / 4e-110 AT3G52300 298 / 2e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10038474 [exp] 309 / 2e-109 AT3G52300 297 / 7e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043800 [exp] 297 / 1e-104 AT3G52300 291 / 3e-102 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Potri.010G217800 [exp] 288 / 2e-101 AT3G52300 281 / 1e-98 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [flax] [poplar] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Lus10040374 pacid=23173827 polypeptide=Lus10040374 locus=Lus10040374.g ID=Lus10040374.BGIv1.0 annot-version=v1.0 ATGAGCGGAACGGTGAAGAAAGCAGCTGATGTTGCGTTCAAGGCATCCAAGAACATTGATTGGGAAGGAATGGCCAAGCTCCTCGTCTCCGATGAGGCTC GCAAGGAGTTCTCCGGCCTCCGTCGTGCTTTCGATGAGGTCAATTCCACTCTCCAGACCAAATTCAGCCAGGAGCCTGAACCCATAGATTGGGAGTATTA CAGGAAAGGAATCGGCTCACGCTTGGTGGATATGTACAAAGAGGCTTATGACAGCGTCGAAGTCCCGAAGTATGTAGACAAAGTGACACCGGAATACAAG CCTAAATTTGAGGCCTTGATGGTAGAATTGAAGGAAGCAGAGCAGATGTCTCTCAAGGAGTCCGATCGTTTGGAGAAGGAAATCGCCGAGGTCCAAGAGC TCAAGAAAAAGATCAGCACCATGACTGCAGACGAGTACTTCGAGAAGCATCCGGAGCTGAAGAAGAAGTTTGACGACGAAATCAGGAACGACTACTGGGG CTATTGA
AA sequence Show only first row Show all	>Lus10040374 pacid=23173827 polypeptide=Lus10040374 locus=Lus10040374.g ID=Lus10040374.BGIv1.0 annot-version=v1.0 MSGTVKKAADVAFKASKNIDWEGMAKLLVSDEARKEFSGLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDSVEVPKYVDKVTPEYK PKFEALMVELKEAEQMSLKESDRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	0	1
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	1.7	0.9398
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	1.7	0.9406
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	2.0	0.9399
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	7.1	0.8966
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	8.5	0.8855
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	9.2	0.8779
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	10.0	0.9183
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	12.8	0.8886
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	16.5	0.8877
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	17.3	0.9175

Compare expression of checked genes

Lus10040374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.