Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35800 983 / 0 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 408 / 1e-135 Mitochondrial substrate carrier family protein (.1) AT1G34065 136 / 7e-35 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 127 / 5e-32 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G74240 124 / 1e-30 Mitochondrial substrate carrier family protein (.1) AT4G11440 122 / 2e-28 Mitochondrial substrate carrier family protein (.1) AT5G42130 115 / 2e-27 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT5G61810 98 / 3e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G51050 92 / 4e-19 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G03115 85 / 9e-18 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023493 [exp] 1487 / 0 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 133 / 7e-34 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 127 / 8e-32 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 115 / 2e-27 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 115 / 3e-27 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 102 / 1e-22 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 98 / 4e-21 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 92 / 3e-19 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 88 / 1e-18 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043700 [exp] 1083 / 0 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 1064 / 0 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 133 / 5e-34 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 129 / 1e-32 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 117 / 4e-27 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 114 / 6e-27 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 108 / 2e-25 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 108 / 1e-24 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 107 / 3e-24 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.014G135530 [exp] 92 / 4e-20 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10040375 pacid=23173940 polypeptide=Lus10040375 locus=Lus10040375.g ID=Lus10040375.BGIv1.0 annot-version=v1.0 ATGGTGTCTAGAAATGATCCGATGGAGCCGTTTTTCAATTCAATCCAATCGGTGAAGGAAGCTCTCTCCCCGCTGGAGCTTGGAATTCGAAAAGCTGCTA AAGATTTCGAGACTTGTTGGCGGAGCGGAGGTTGGAGTAACGAGAAAGGATTTGTGAACGAGTTGAATTGCGGAGGCGCCGGGAATCGAGTTCATAGCAA GTTTCAGATCCGTTCCGTTGAGAAGAAAAATGTCTGTAAGGTTGTAGAGAGGAAGAGAGGGTTATCCATTAGAGTTCCTGTTAGAGCTTTGCTTGGGCTG TTTGCTCCTAATTTAGAGCATCAGCGTAAGAGGAATGGTGGCAGTGACACGTCGAAGAAAAGGTCAAAAGGGAAGGAAATGGTGAACGGAGATGAGGGTT GTACAAACTGTTTGAAGTTTGCTGTGACTTGGTCTGTGTTGGTTAATGGATTTGTTCAAGCGTTTCCTATTCCTTTGAAGAACAGCAAAAAGAAGCAGAG CGAAGATAAGCAAGAAGAGGTGAAGGTTCAGTGTGTTAAAGTGTTTCAGAGTAAAAAATGGCGCGGGGAAGAGAAAGATGAGAAGCATGTGTCTCTAGAG TGTCTAATAGGCTTTCTGTTTGATCATTTGGCTCATAATCTGCAAAAATTCGATCAGATTTTGCAAAAGAACGAGAGCAAGTCTTGTGACAGCGAGATTC CAAACCAATCTCCGGTAACCTCTCATTTTGACCACCTTAAAACAGTTATGAGTATTTGGGAAGCTCGCAGGATAGATGTGGATGGATTTTTAGGAAATTT GAGCTTTGCAAGAGTAGGAAGTGTACCTTCGACTATTGTTGGAGTACCTCCTTCAGTTAATGAAGAAGGCGATGATGGTGGTGAAGAGGCTGGAAGTGGT TCACCTCAGAAGCTGGCTAGTGGCTTGTTCAATATTCCATTATCCAATGTGGAGCGTTTGAGGTCAACCTTATCTTCTGTTTCATTAGCGGAGTTGATTG AGCTTGTCCCGCAACTGGGAAAGGCTTCCAAAGATCATCCTGACAAGAAAAAGTTATTCTCTGTACAGGATTTTTTCAGATACACAGAGTCTGAAGGAAA AAGATTCTTTGAGGAGTTGGATAGAGATGGTGATGGTCAAGTGACTCTGGAAGACCTTGAAATTGCTGTGAGAAAGAGGAAGCTGCCCAAGAATTATGCT CGCGATTTCATGCGTCGTGCTAGAAGTCATTTGTTTTCAAAATCTTTTGGTTGGAAGCAGTTTTTGTCACTTATGGAACAGAGGGAACCAACAATTCTTC GTGCTTATACTTCACTGAGTTTGAGCAAGTCTGGTACACTTAAAAAGAGTGAAATAATGGCATCACTTGAAAAGGCTGGACTTCCTGCAAATGAAGAAAA TGCCATGGCCATGATGCGATTTCTAAAGGCAGATGCAGAAGAATCTATCTCATATGGCCATTTTAGGAATTTTATGCTTCTGTTGCCTTCTGATCGTCTT CAAGATGATCCCAGGAGCATTTGGTTTGAAGCTGCAACTGTTGTCGCTGTTGCTCCTCCTGTGGAAATACCTGCCGGAAGTGTCCTACGATCTGCATTGG CTGGGGGCCTCTCATGTGCACTTTCCACATCTCTGATGCATCCTGTTGATACTGTAAAGACTCGTGTGCAAGCCTCCACTTTAACCTTCCCAGAGATCAT TTCAAAGCTTCCAGAAATTGGAGTTCAAGGTTTATACCGGGGATCAATCCCTGCAATTCTGGGACAGTTTTCCAGTCATGGCCTGCGAACAGGCATCTTT GAAGCTAGCAAACTGCTGCTAATTAATGTTGCCCCTACGCTCCCAGATTTCCAGGTGCAATCTATAGCATCATTTTGTAGCACGGTTTTGGGTACAGCGG TCCGAATTCCTTGCGAGGTGTTGAAGCAGCGTTTGCAGGCCGGTCTATTTGACAACGTTGGAGAAGCCATCGTAGGGACTTGGCAACAGGATGGTCTGAA GGGCTTCTTTCGCGGTACCGGTGCCACCCTCTGCCGTGAAGTTCCATTCTACGTGGTCGGGATGGGACTATACGGCGAATCGAAAAAGGTCGCTGAACGA TTTCTGCGGCGAGAGCTGGAACCCTGGGAAACAATTTGCGTCGGAGCCTTATCTGGCGGACTCACTGCCGTCTTAACGACCCCGTTCGACGTGATGAAGA CCAGAATGATGACTGCCCCTCGTGGTAGACACATCCCGATGTCGTTAGTTGCGTACTCGATACTTCGTCGCGAGGGGCCCCTCGGCTTGTTCAAGGGAGC ATTACCAAGGTTCTTCTGGATTGCACCTTTAGGTGCCATGAACTTTGCAGGGTACGAACTAGCAAGGAAGGCGATGACCAAAAGAGCGGAGCAAGATCGA GAAGCTGCCGCCTCCGAAGTAGTTGACTAA
AA sequence Show only first row Show all	>Lus10040375 pacid=23173940 polypeptide=Lus10040375 locus=Lus10040375.g ID=Lus10040375.BGIv1.0 annot-version=v1.0 MVSRNDPMEPFFNSIQSVKEALSPLELGIRKAAKDFETCWRSGGWSNEKGFVNELNCGGAGNRVHSKFQIRSVEKKNVCKVVERKRGLSIRVPVRALLGL FAPNLEHQRKRNGGSDTSKKRSKGKEMVNGDEGCTNCLKFAVTWSVLVNGFVQAFPIPLKNSKKKQSEDKQEEVKVQCVKVFQSKKWRGEEKDEKHVSLE CLIGFLFDHLAHNLQKFDQILQKNESKSCDSEIPNQSPVTSHFDHLKTVMSIWEARRIDVDGFLGNLSFARVGSVPSTIVGVPPSVNEEGDDGGEEAGSG SPQKLASGLFNIPLSNVERLRSTLSSVSLAELIELVPQLGKASKDHPDKKKLFSVQDFFRYTESEGKRFFEELDRDGDGQVTLEDLEIAVRKRKLPKNYA RDFMRRARSHLFSKSFGWKQFLSLMEQREPTILRAYTSLSLSKSGTLKKSEIMASLEKAGLPANEENAMAMMRFLKADAEESISYGHFRNFMLLLPSDRL QDDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSTSLMHPVDTVKTRVQASTLTFPEIISKLPEIGVQGLYRGSIPAILGQFSSHGLRTGIF EASKLLLINVAPTLPDFQVQSIASFCSTVLGTAVRIPCEVLKQRLQAGLFDNVGEAIVGTWQQDGLKGFFRGTGATLCREVPFYVVGMGLYGESKKVAER FLRRELEPWETICVGALSGGLTAVLTTPFDVMKTRMMTAPRGRHIPMSLVAYSILRREGPLGLFKGALPRFFWIAPLGAMNFAGYELARKAMTKRAEQDR EAAASEVVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	0	1
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	1.4	0.9607
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	2.4	0.9319
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	4.5	0.9277
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	4.7	0.9407
AT3G53630			unknown protein		Lus10024421 [exp]	4.9	0.9254
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	5.9	0.9252
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	7.3	0.8748
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	8.8	0.8974
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	8.9	0.9222
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	8.9	0.9255

Compare expression of checked genes

Lus10040375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.