Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03030 159 / 2e-48 Chaperone DnaJ-domain superfamily protein (.1) AT3G09700 159 / 5e-48 Chaperone DnaJ-domain superfamily protein (.1) AT2G35795 157 / 3e-47 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023495 [exp] 311 / 3e-106 ND 48 / 1e-06 Lus10041420 [exp] 174 / 2e-53 AT2G35795 194 / 2e-65 Chaperone DnaJ-domain superfamily protein (.1) Lus10023494 [exp] 157 / 7e-48 AT5G03030 135 / 3e-43 Chaperone DnaJ-domain superfamily protein (.1) Lus10036507 [exp] 145 / 3e-42 AT2G35795 163 / 3e-53 Chaperone DnaJ-domain superfamily protein (.1) Lus10041416 [exp] 137 / 4e-38 AT4G30230 61 / 5e-11 unknown protein Lus10036511 [exp] 119 / 3e-31 AT4G30230 61 / 8e-11 unknown protein Lus10015065 [exp] 107 / 2e-28 AT2G35795 118 / 3e-36 Chaperone DnaJ-domain superfamily protein (.1) Lus10019915 [exp] 106 / 6e-25 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026485 [exp] 96 / 7e-23 AT1G09080 124 / 2e-36 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131200 [exp] 166 / 1e-50 AT2G35795 195 / 2e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G043500 [exp] 158 / 9e-48 AT2G35795 179 / 4e-60 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G038800 [exp] 141 / 2e-41 AT2G35795 160 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G218300 [exp] 67 / 1e-12 AT4G30230 48 / 2e-06 unknown protein Potri.008G043300 [exp] 64 / 2e-11 AT4G30230 50 / 4e-07 unknown protein Potri.006G168400 [exp] 54 / 6e-08 AT4G30230 94 / 8e-23 unknown protein Potri.018G092800 [exp] 47 / 6e-06 AT4G30230 98 / 4e-24 unknown protein Potri.010G218400 [exp] 44 / 0.0001 ND / Potri.008G042900 [exp] 41 / 0.0006 ND / Potri.010G243100 [exp] 42 / 0.0008 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10040376 pacid=23174087 polypeptide=Lus10040376 locus=Lus10040376.g ID=Lus10040376.BGIv1.0 annot-version=v1.0 ATGAACCTTGATGATCACCAACCTTCTCATGATCCAGAAGTCGACGACGACCACCATGAAACCCTTTCCCTCCGCGATCTCCCTTTATCGACCAGCAGCA GCTGCAATAGTAGTAACACTGATGTTACTTGCGACGAAAGCAATCTGCATCATCATCAACAGGATACGTTTGAGTTCTTCAGTGGAGACTTCAATCCTTC TTCTTCTGATAACATCATATTCTATGGGAAGATCATTCCATATAGAGGTCCAAAACCAGCCGAAGATGATCACAAGAAGAAAGCCACCAAAAGTGAACCA AGATCAGATCTTTATCCTAATCATGGTCAACTAAACAGGTTTTGGTCACTACCCTTGTCCGCGAAGAGCAGCGAATTCGAGGTGAAGAGGGTGTCTTCGA GGAAATCGAGATGGTACTTGCTTGCATTCGGAGTAGGGAAGGTTCCGGTCAAGATGGAGCTTGATGATATGAAGTTCAGACAGAGCAGGAAGATGAGCAG TAGTTACAATTACAGCAGCAGCAGCAGCCAAAAGTTTGAGACAAGTAGGAACAGGAGCTCTAGAGGGTTGCTTGGGATTTTGGGATGCAGCAGAAGAGAA GATGCCAATTCCATGCGAATTGTGGCTGAAGTTAGTGGCTCGAATCCCAGCAGCCGCATCTCTTCTTTTTTCCCCTTTTCTTCTCTTATTTGTTTTCCAG ACTTTTCTCCATTCGCCGCGCACACAGCAGAGAACCATAAACAACTTCTGGAAAAACCATTGAACGAAAGCTCAAGAAATTGGTATCCATCAGCTTCCCG AGTTTCCAACCTCACTGAAATGGCTACTCCTTTCTTGGCTGGAGCGACAGTCGCAGCTGCTGCACTAGCCGCTAGATACGGGATTCAGGCATGGCAATCG TTCAAGGCTCGGCCACCAAAAATGCGCAGATTCTATGAAGGTGGTTTTCAGGCTCAGATGACTAGAAGAGAAGCAGCTCTAATTCTTGGTCTTAGGGAAA GTGCGGCGCAAGACAAGATCAAGGAAGCGCATAGAAGAGTAATGGTGGCGAACCATCCCGATGCAGGTGGTAGCGGTTACCTGGCTTCCAAGGTCAATGA AGCCAAAGATGTGATGCTTGGGAAGACTAAGGGGAGTGGTTCTGCTTTCTAA
AA sequence Show only first row Show all	>Lus10040376 pacid=23174087 polypeptide=Lus10040376 locus=Lus10040376.g ID=Lus10040376.BGIv1.0 annot-version=v1.0 MNLDDHQPSHDPEVDDDHHETLSLRDLPLSTSSSCNSSNTDVTCDESNLHHHQQDTFEFFSGDFNPSSSDNIIFYGKIIPYRGPKPAEDDHKKKATKSEP RSDLYPNHGQLNRFWSLPLSAKSSEFEVKRVSSRKSRWYLLAFGVGKVPVKMELDDMKFRQSRKMSSSYNYSSSSSQKFETSRNRSSRGLLGILGCSRRE DANSMRIVAEVSGSNPSSRISSFFPFSSLICFPDFSPFAAHTAENHKQLLEKPLNESSRNWYPSASRVSNLTEMATPFLAGATVAAAALAARYGIQAWQS FKARPPKMRRFYEGGFQAQMTRREAALILGLRESAAQDKIKEAHRRVMVANHPDAGGSGYLASKVNEAKDVMLGKTKGSGSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10040376 [exp]	0	1
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	2.0	0.9404
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	3.5	0.9419
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	8.8	0.9185
AT5G09960			unknown protein		Lus10006803 [exp]	8.9	0.9150
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	10.6	0.9257
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	11.4	0.8828
AT4G30230			unknown protein		Lus10036511 [exp]	11.5	0.9015
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	12.0	0.9154
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	12.4	0.9316
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	12.8	0.9233

Compare expression of checked genes

Lus10040376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.