Plant FIBer expression Database

Lus10040377 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023496
[exp]
315 / 8e-109 ND /
Lus10036512
[exp]
77 / 4e-16 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G043300
[exp]
43 / 9e-05 AT4G30230 50 / 4e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10040377 pacid=23174154 polypeptide=Lus10040377 locus=Lus10040377.g ID=Lus10040377.BGIv1.0 annot-version=v1.0
ATGAATTCCCAGCATCTTACTCTGCCACTAGCCCCTCACCACTACACCCCAAACAGCACGGCCGAAACAACGAACCACGACGATGATTTCAATGATCTCG
AAGATACCCTTTCCCTATGCGACCTCCCCCTCCACAGCAGCAACATCGATCGTGCTGCTGCCGAGGCAGAGGCAGAGGATTTGCCCGACGACGATGATGA
AGAATTCGAGTTCTCTAGGGAGTACTTGATGACTGCAAGCCGTGCTTATTCTCATCGTCACGATGATCGTGACAATAATGCTTATACCAACAACAACATC
ACTGGAAGTAACGGTATTGTGTTCTGCGGGAAGCTGATCAATTCCAGACAATCAATTATTGATCAAGACATTATTCCGAAGCAGAGTAATAAGAAACAGA
GCATCCGCCGCCGTGGGTTCTTCTCATGGAAATCATCATCATCCTCTTCTTCCTCCTCATCATCATCGTCGATTTCGTCCTCGTTCTCTTGGTTTAGTTC
TTCATCGAGCGGGTCTCGTAAATCGGAGAAGGCGAAGAGCAAGAAGAGCAAGAGTGGGATGGGGTACTTGTGTTTGGGGATTGGGGTGGAATGGAAGTTC
CCGGTGAGGAGTATGGATGTAAAGGAGATAAAGATGAGGCAGAGCAGGCGAATGAGTTTCAGCAATGTTGTTGACGAAGATGATGTTCGATCACCGGCGG
AAAATATGGCCGTCGTCGGTGCTAACAACTCCGGAAATGGGATTTGGAGATTGCTCGGGATTTTAGCCGGCGGCCGCCCCTAA
AA sequence
>Lus10040377 pacid=23174154 polypeptide=Lus10040377 locus=Lus10040377.g ID=Lus10040377.BGIv1.0 annot-version=v1.0
MNSQHLTLPLAPHHYTPNSTAETTNHDDDFNDLEDTLSLCDLPLHSSNIDRAAAEAEAEDLPDDDDEEFEFSREYLMTASRAYSHRHDDRDNNAYTNNNI
TGSNGIVFCGKLINSRQSIIDQDIIPKQSNKKQSIRRRGFFSWKSSSSSSSSSSSSSISSSFSWFSSSSSGSRKSEKAKSKKSKSGMGYLCLGIGVEWKF
PVRSMDVKEIKMRQSRRMSFSNVVDEDDVRSPAENMAVVGANNSGNGIWRLLGILAGGRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10040377
[exp]
0 1
AT2G41480 Peroxidase superfamily protein... Lus10012684
[exp]
2.4 0.9296
AT5G18150 Methyltransferase-related prot... Lus10005698
[exp]
3.6 0.9446
AT3G48280 CYP71A25 "cytochrome P450, family 71, s... Lus10019457
[exp]
8.2 0.9344
AT5G36160 Tyrosine transaminase family p... Lus10033661
[exp]
12.4 0.9158
AT4G26200 ACS7, ATACS7 1-amino-cyclopropane-1-carboxy... Lus10032695
[exp]
12.8 0.9048
Lus10023495
[exp]
14.5 0.9173
AT2G05940 RIPK RPM1-induced protein kinase, P... Lus10027638
[exp]
15.9 0.9202
AT2G27510 ATFD3 ferredoxin 3 (.1) Lus10004870
[exp]
23.5 0.9271
AT4G30230 unknown protein Lus10041416
[exp]
25.1 0.9043
AT3G06490 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb dom... Lus10037818
[exp]
25.2 0.9274

Lus10040377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.