Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 869 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 869 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 869 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 869 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 291 / 6e-93 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 280 / 1e-87 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G35550 174 / 1e-53 elongation factor Tu C-terminal domain-containing protein (.1) AT4G20360 163 / 5e-45 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 161 / 1e-44 GTP binding Elongation factor Tu family protein (.1) AT2G31060 69 / 2e-12 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023497 [exp] 899 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 881 / 0 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10023174 [exp] 856 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 786 / 0 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10015070 [exp] 674 / 0 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10020153 [exp] 306 / 2e-97 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 306 / 5e-93 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041996 [exp] 288 / 5e-92 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 287 / 4e-91 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130900 [exp] 880 / 0 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 871 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 871 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 871 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 865 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 865 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 864 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 864 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 487 / 9e-174 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.019G062500 [exp] 293 / 9e-94 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040378 pacid=23173814 polypeptide=Lus10040378 locus=Lus10040378.g ID=Lus10040378.BGIv1.0 annot-version=v1.0 ATGGGTAAGGAAAAGGTTCACATCAACATTGTGGTCATCGGACACGTCGACTCTGGCAAGTCCACAACAACCGGCCACTTGATCTACAAGCTTGGAGGTA TTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCGTGGGTGCTTGACAAGCTCAAGGCTGAGCG TGAGCGTGGTATCACAATTGATATTGCCCTGTGGAAATTCGAAACCACCAAGTACTACTGCACTGTCATTGATGCCCCTGGACATCGTGACTTTATCAAG AACATGATCACTGGTACCTCCCAGGCTGATTGTGCTGTGCTCATCATCGACTCCACCACTGGCGGGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCC GTGAGCATGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCTAAGTACTCGAAGGGAAGGTA TGATGAAATTGTGAAGGAAGTGTCATCATACTTGAAGAAGGTTGGGTACAACCCTGACAAGATTCCTTTCGTACCCATCTCTGGGTTTGAGGGAGACAAC ATGATCGAGAGGTCGACCAACCTGGACTGGTACAAGGGTCCAACCTTGCTTGAGGCTCTGGACAACATCAACGAGCCGAAGAGACCCACAGACAAGCCCC TCCGTCTCCCACTTCAAGACGTTTACAAAATCGGTGGTATCGGAACTGTTCCAGTGGGTAGGGTGGAAACCGGTGTCCTCAAGCCTGGTATGGTTGTCAC CTTTGGACCATCCGGGTTGACAACTGAAGTCAAGTCCGTCGAGATGCACCACGAAGCCCTCCAGGAAGCTCTACCGGGCGACAATGTCGGGTTCAATGTT AAGAATGTGGCTGTCAAGGATCTGAAGCGTGGCTTTGTTGCCTCCAACTCCAAGGACGACCCTGCCAAGGAGGCGGCTAACTTCACCTCCCAGGTCATCA TCATGAACCACCCAGGCCAGATTGGAAACGGTTACGCCCCGGTTCTCGATTGCCACACCTCCCACATTGCTGTCAAGTTCTCCGAGATCCTCACCAAGAT CGACAGGCGTTCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGCTTCGTCAAGATGGTTCCCACCAAGCCTATGGTGGTC GAGACCTTCTCAATGTACCCACCCTTGGGCCGTTTTGCTGTCAGAGACATGCGTCAGACTGTTGCAGTGGGTGTGATCAAGAGCGTGGAGAAGAAGGACC CGACTGGAGCCAAGGTGACCAAGGCAGCTGCCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10040378 pacid=23173814 polypeptide=Lus10040378 locus=Lus10040378.g ID=Lus10040378.BGIv1.0 annot-version=v1.0 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIK NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN MIERSTNLDWYKGPTLLEALDNINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNV KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMVPTKPMVV ETFSMYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	1.7	0.8892
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	2.8	0.9063
AT3G48990			AMP-dependent synthetase and l...		Lus10027478 [exp]	6.8	0.8909
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10037019 [exp]	8.7	0.8689
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	15.9	0.8660
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	17.0	0.8744
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	18.7	0.8145
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	22.4	0.8397
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	26.2	0.8347
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	26.2	0.7975

Compare expression of checked genes

Lus10040378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.