Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35790 199 / 4e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023498 [exp] 366 / 8e-130 AT2G35790 282 / 2e-96 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219400 [exp] 227 / 8e-75 AT2G35790 243 / 2e-81 unknown protein Potri.008G042800 [exp] 224 / 1e-73 AT2G35790 231 / 1e-76 unknown protein Potri.010G219000 [exp] 223 / 7e-73 AT2G35790 239 / 3e-79 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06979 [flax] [poplar] TMEM70 Assembly, mitochondrial proton-transport ATP synth complex
Representative CDS sequence Show only first row Show all	>Lus10040379 pacid=23173924 polypeptide=Lus10040379 locus=Lus10040379.g ID=Lus10040379.BGIv1.0 annot-version=v1.0 ATGGGACGATCAGCTATCCTCCACTTGATCCGATCTCAAACCAGATCCATATCTTCCGCCTCTTTCACCAGCTCACCTTCTTCAGGCTATCAAGCTCACA GGACCATCACATCTTTTAGCCATCAAAACGCTAAACCGAGCTTCCGGCCTACTCTTACCTCTCAGACAAGATGGGTTTCTCAAGCTGCTGCTGCTGCAGA ACCACGCAAGGACAAAGAACCAAAACCTCAAGACGAGGACGAAAACGATTCCGGATTTGTCTACCGCGGTCCGATATCATCCACCATCAAGAAAGTGAAG ATGCTGTCGCTCTCCACCTGCTGTCTGTCAGTTTCCCTCGGACCGGTCATCACTTTCATGACATCGACGGATTCGAACGTCATCCTGAAGGGGGCAGTTG CATCGTCCGTGATTTTCTTCAGTGCTTCAACCACCGCCGCGCTGCATTGGTTCGTGAGCCCTTACATTCACAAGCTCAGGTGGCAGCCGGGTTCGGACAG TTTCGTGGCGGAGCAGATGTCGTGGCTGGGCACTTACGTCCCGGAGACCATCAGGTTTGCGGACATTCGTCCCGCCGAGACCAACCGGCCCTACGTGACG TTTATGGCGAATAAGAAGTTCTACTTTATCGACACGGAGCACTGCCAGAACAAGGCGTTGCTGGCTAGACTCAACCCGCAGAAACAGGAATCCGCCTTCA AGAACCTATGA
AA sequence Show only first row Show all	>Lus10040379 pacid=23173924 polypeptide=Lus10040379 locus=Lus10040379.g ID=Lus10040379.BGIv1.0 annot-version=v1.0 MGRSAILHLIRSQTRSISSASFTSSPSSGYQAHRTITSFSHQNAKPSFRPTLTSQTRWVSQAAAAAEPRKDKEPKPQDEDENDSGFVYRGPISSTIKKVK MLSLSTCCLSVSLGPVITFMTSTDSNVILKGAVASSVIFFSASTTAALHWFVSPYIHKLRWQPGSDSFVAEQMSWLGTYVPETIRFADIRPAETNRPYVT FMANKKFYFIDTEHCQNKALLARLNPQKQESAFKNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35790			unknown protein		Lus10040379 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	1.0	0.9177
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	3.0	0.8930
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	6.3	0.9123
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	6.8	0.9174
AT1G02870			unknown protein		Lus10001459 [exp]	7.5	0.8789
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	9.5	0.9133
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	10.5	0.9063
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	11.0	0.8944
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	11.0	0.8782
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	13.2	0.8964

Compare expression of checked genes

Lus10040379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.