Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 379 / 6e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 361 / 1e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 358 / 2e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 347 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 343 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G25450 341 / 7e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 340 / 1e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 337 / 3e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 335 / 2e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 333 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023499 [exp] 615 / 0 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 615 / 0 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022190 [exp] 409 / 2e-143 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 402 / 9e-140 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 351 / 2e-119 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 349 / 7e-119 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 348 / 2e-118 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 348 / 2e-118 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 336 / 6e-114 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165400 [exp] 437 / 1e-153 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 413 / 4e-144 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 372 / 5e-128 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 362 / 5e-124 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 320 / 1e-107 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 317 / 2e-106 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 304 / 2e-101 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 277 / 2e-90 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 276 / 3e-90 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 276 / 7e-90 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10040380 pacid=23173991 polypeptide=Lus10040380 locus=Lus10040380.g ID=Lus10040380.BGIv1.0 annot-version=v1.0 ATGGATAGTAATAGTACTAAACCGGCAGAAATTCCGGATAGGCACACCGAACTGAAAGCCTTCGATGACACCAAACGTGGCGTGAAAGGCCTTGTCGATG CTGGAATCAAGCAGCTCCCTCGAATATTCAAGCACGATTCGTCGGTACTGATCAACGCGGAACCAGCTGTCTCGAACGATGATGCTGCCAAACTTGCCAT ACCAGTCATCGACTTTCGGGGCATCCACGAGGATCCACGTGCACGTGCCGATGCTATGAAGCAAGTCCACGATGCTTGCTCAGAGTGGGGATTCTTCCAG GTGATCAACCACAGAATCCCGGTAACACTCCTCGAGAGTACGATTGATGGAATCCGAAAGTTTCACGAGCAGGATGATGATGCCAAGCAAGAGGTGTACA GCAGGGACGAGACGAAGCATGTGATGTACAATACCAACTTCGATTTCTACCAAGCTTCAGCAGCTAACTGGAGAGACACTCTCTACTGCAATATTGCGCC CTTCCCTCCACCCCCTGAGCATCTTCCTGCCATTTGCAGAGATGTAATAATCAACTACACAAAAGAAGTAATGGAACTGGCTCTAACTGTTTTCGAGCTG ATGTCGGAAGCTCTGGGGCTTGAATCGAACCACCTACGAGACATGGGATGCAGCGATGGACTTTTACTGTCGGGTCATTACTACCCAGAGTGTCCAGAGC CAGAATCGACATTCGGAATCAGCAAACACACAGACAGTAGTTTCCTGACCGTGCTTCTCCAAGACGAATCGAAAGGACTACAGGCTCTCTACCGGGGCCA ATGGGTCGATGTTAAACCCATACCTGGATCCTTAGTCCTCAACATGGGAGACATGATCCAGCTGATAACGAACGGCAAGTACAAAAGCGTGTATCATAGA GTCGTGCCAAAGAGCAGCGGAGCGGCCAGGGTTTCGGTCTCTTGCTTCTTGAGGATGCATCATCTGACGGAAGGCAGTGAGAGGGTGTATGAACCGATCA AGGAATTGGTGACGGAGGAGAGCCCGGCGATATATAAGGGGACGAGCATACATTACCATGTGACCGACGTCTACTTCGTTGGAATAGACGGCGCCAGTAA ACTCGACTATTTGAAGATATGA
AA sequence Show only first row Show all	>Lus10040380 pacid=23173991 polypeptide=Lus10040380 locus=Lus10040380.g ID=Lus10040380.BGIv1.0 annot-version=v1.0 MDSNSTKPAEIPDRHTELKAFDDTKRGVKGLVDAGIKQLPRIFKHDSSVLINAEPAVSNDDAAKLAIPVIDFRGIHEDPRARADAMKQVHDACSEWGFFQ VINHRIPVTLLESTIDGIRKFHEQDDDAKQEVYSRDETKHVMYNTNFDFYQASAANWRDTLYCNIAPFPPPPEHLPAICRDVIINYTKEVMELALTVFEL MSEALGLESNHLRDMGCSDGLLLSGHYYPECPEPESTFGISKHTDSSFLTVLLQDESKGLQALYRGQWVDVKPIPGSLVLNMGDMIQLITNGKYKSVYHR VVPKSSGAARVSVSCFLRMHHLTEGSERVYEPIKELVTEESPAIYKGTSIHYHVTDVYFVGIDGASKLDYLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	0	1
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	1.0	0.9428
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	1.4	0.9377
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	2.0	0.9071
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	3.0	0.9123
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	5.5	0.8994
AT5G59050			unknown protein		Lus10001626 [exp]	6.9	0.8811
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	7.3	0.8557
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005965 [exp]	7.4	0.8701
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	7.7	0.8902
AT2G25625			unknown protein		Lus10013129 [exp]	11.8	0.8897

Compare expression of checked genes

Lus10040380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.