Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52310 647 / 0 protein kinase family protein / C-type lectin domain-containing protein (.1) AT3G15890 211 / 3e-63 Protein kinase superfamily protein (.1) AT1G52540 207 / 4e-62 Protein kinase superfamily protein (.1) AT5G02800 202 / 1e-59 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G09010 202 / 2e-59 Protein kinase superfamily protein (.1) AT1G16670 199 / 2e-58 Protein kinase superfamily protein (.1) AT1G26150 205 / 2e-57 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 202 / 4e-57 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT4G01330 198 / 4e-57 Protein kinase superfamily protein (.1.2) AT1G61860 195 / 7e-57 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023500 [exp] 1035 / 0 AT1G52310 647 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Lus10043050 [exp] 216 / 8e-65 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 216 / 8e-65 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10011490 [exp] 213 / 7e-64 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10040050 [exp] 207 / 2e-61 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10001323 [exp] 204 / 6e-60 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10006985 [exp] 203 / 6e-60 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10019621 [exp] 203 / 6e-60 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10023130 [exp] 199 / 9e-59 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160300 [exp] 753 / 0 AT1G52310 703 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Potri.003G032100 [exp] 214 / 3e-64 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 206 / 3e-61 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 206 / 4e-61 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 206 / 6e-61 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 204 / 2e-60 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 204 / 3e-60 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 202 / 7e-60 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 208 / 4e-59 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 207 / 1e-58 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0056 [flax] [poplar] C_Lectin PF00059 [flax] [poplar] Lectin_C Lectin C-type domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040381 pacid=23173888 polypeptide=Lus10040381 locus=Lus10040381.g ID=Lus10040381.BGIv1.0 annot-version=v1.0 ATGGGTCTTGTCACTCTGCAGTTTCTGGTGATTTTGGCTATCTGTGTTGCTTTGGAGGTTGCCCCATCCCAAGGGAAACACGATGATGCTGTTGTAGCGG ATTCAGGGAATGCAGGCAGCAAAGCGGGTAAAGGATGGTGCCCTTCCGGTTGGGAACCTAACATGAATAGAAGTACGTGCTTCAAGTACATTGGAGATAT GCAGACATGGGAGGAGTCAGAAACTCGGTGCAAAGGCCATGGAGGACACTTGGCAGCGCTGAATTCATACCAAGAACTAGACTTTGTCCAAGGGTTGTGT GGCCAGAGTGCCTATGGTGGCTGTTGGGTTGGTGGACGAGGAGCAAACTACTCCAGTGTTGGTTTTACATGGAAGTGGTCTGATAATACAACAAGTTGGA ATCACTCACTTTTCGGTCGAGAGCGAAACGATACTACTGGCAAGTCTTGTACATTGCTGACAAACGGAACCACACGTATTATGGGAGAAAGATGCAATGC ATCTCATTCTTCGATTTGTATGCTCAACTCCGAGAAGAAATGTTACCATATGCACTGCCACAGGGAGTATCTCATCATCCTTGCAGTCGTTAGTGGACTA ATCCTCACTGCTACTTTGGCTGTTGTTATTTGGCTCCTTGCATTCCGGCGCAACAAGAAGAGTCGAAAATCCCGTAAAACATCGAATCCTTCTTCCGCCA CTGCGTTAGTTGCTCCATCATGGAAAGTCTTCGCGAAAGAAGAACTGAAATCTTCAACAAAGAATTTCAGCGAGGAAAACCGGCTTCACGGAGATGCTAA AACCGGTGGAACATACAGTGGCCTTCTACCTGATGGAACTAGGGTGGCAGTGAAGAGGCTGAAGAGATCTAGTTTTCAGAGGAAGAAGGAGTTCTACTCA GAAATCGGAAGGGTTGCAAGGCTTCACAATCCGAATTTGGTTTCGATCAAAGGGTGCTGCTACGATCATGGTGACCGCTACATAGTTTACGACTTCATTG TTAATGGCCCTCTGGATCGATGGCTACACCACATGCCGAGGGGAGGCAGGTGCTTGGACTGGAACACGAGGATGAAAATCGCCACAACTCTCGCTCAAGG AATCGCGTTTCTGCATGACAAGGTAAAGCCACACATTGTGCACAGAGAAATCTGTGCTAGTAATGTACTGCTCGACGAGGAATTCGGCGCCCACCTAATG GGAGTCGGCCTGTCGAAGTTCGTTCCGTGGGAAGGAATGCAGGAAAAAACAGTGATGGCTGGTGGCACATACGGGTATCTAGCTCCGGAGTTCGTCTACG AGAACGAGCTCACGACCAAGAGCGACGTTTACAGTTTCGGAGTGCTGCTCCTGGAAATAGTCACCGGTCGTAGACCTGCACAGGCAGTTGATTCCGTAGG GTGGCAGAGCATATTCGAATGGGTGACACCTCTGGTGCAGGCAAACTGCTACTTGGAGCTCTTGGATCCTCATTTATCGCTATCTTCTTCGGCACAAGTT CCGGAAGCAGGTACCGTTCAGAAGGTGGTGGACCTTGTTTATGCTTGCACGCAACATGTGCCATCGATGCGGCCGAGAATGTCTCATGTTAGTCATCAAC TGCTGCAGTTGTCTGGTTTAAAGTAA
AA sequence Show only first row Show all	>Lus10040381 pacid=23173888 polypeptide=Lus10040381 locus=Lus10040381.g ID=Lus10040381.BGIv1.0 annot-version=v1.0 MGLVTLQFLVILAICVALEVAPSQGKHDDAVVADSGNAGSKAGKGWCPSGWEPNMNRSTCFKYIGDMQTWEESETRCKGHGGHLAALNSYQELDFVQGLC GQSAYGGCWVGGRGANYSSVGFTWKWSDNTTSWNHSLFGRERNDTTGKSCTLLTNGTTRIMGERCNASHSSICMLNSEKKCYHMHCHREYLIILAVVSGL ILTATLAVVIWLLAFRRNKKSRKSRKTSNPSSATALVAPSWKVFAKEELKSSTKNFSEENRLHGDAKTGGTYSGLLPDGTRVAVKRLKRSSFQRKKEFYS EIGRVARLHNPNLVSIKGCCYDHGDRYIVYDFIVNGPLDRWLHHMPRGGRCLDWNTRMKIATTLAQGIAFLHDKVKPHIVHREICASNVLLDEEFGAHLM GVGLSKFVPWEGMQEKTVMAGGTYGYLAPEFVYENELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWVTPLVQANCYLELLDPHLSLSSSAQV PEAGTVQKVVDLVYACTQHVPSMRPRMSHVSHQLLQLSGLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	1.4	0.8996
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	4.6	0.8687
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	7.1	0.8467
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	7.7	0.8642
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	7.7	0.8690
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	10.1	0.8590
AT1G51310			transferases;tRNA (5-methylami...		Lus10038747 [exp]	13.6	0.8339
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	13.9	0.8412
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	14.1	0.8579
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	14.5	0.8431

Compare expression of checked genes

Lus10040381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.