Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 396 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 377 / 8e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 376 / 1e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30830 369 / 8e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 360 / 8e-123 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 352 / 4e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 352 / 4e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 348 / 1e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040380 [exp] 615 / 0 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023499 [exp] 602 / 0 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022190 [exp] 418 / 5e-147 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 403 / 3e-140 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 374 / 1e-128 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 372 / 4e-128 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 368 / 2e-126 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 355 / 3e-121 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 354 / 6e-121 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165400 [exp] 436 / 4e-153 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 421 / 2e-147 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 391 / 1e-135 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 385 / 3e-133 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 347 / 2e-118 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 332 / 2e-112 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 315 / 1e-105 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 288 / 1e-94 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 281 / 1e-91 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 280 / 1e-91 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10040382 pacid=23174206 polypeptide=Lus10040382 locus=Lus10040382.g ID=Lus10040382.BGIv1.0 annot-version=v1.0 ATGGCGAGTACCAAACCAGTCGCTTCAGACAGACAAACAGAACTAAAGGCATTCGATAACACCAAACGCGGCGTGAAAGGTCTCGTGGATGCTGGAATCA AGCAGCTTCCTCGGATATTCAAGCACGATTCGTCGGTGATCAATGCGGAACCCGCTGTACTTTCGAAGGATGATGCTGCCAAACTCGCCATACCGGTCAT CGACTTCCGGGGCATCCACGAGGATCCGCGTGCACGTACAGCTGCCATGAAGAAAGTCCACGATGCTTGTTCCGAATGGGGATTCTTCCAGGTGATCAAC CACGGAATACCCGTCTCGCTTCTCGAGAGCGCGATAGACGGGATTCGAAAGTTTCACGAGCAGGATGATGAGGCCAAGGAAGAGTTGTACAGCAGGGACC CGACAAAGGATGTATTGTACAATACCAACTTCGATTTGTACCAAGCTTCGGCAGCTAACTGGAGAGACTCTCTGTACTGCAATATGGCGCCTGTCCCTCC ACCCCCTCACCATCTTCCTGCCATTTGCAAAGATGTGGTCATCAACTACTCAAAAGAAGTAATGAAACTAGGGTTAACCATTTTCGAGCTGATGTCGGAA GCTCTGGGGCTTGAACCGAACCACCTAAGAGACATGGGATGCAGCGATGGACTTTTACTGTCAGGTCATTACTATCCAGAATGCCCAGAGCCAGAATCAA CATTCGGAATCAGCAAACACACAGACAGTAGTTTCCTGACCGTGCTTCTCCAAGACCAATCGGGTGGACTACAAGCTCTCTACCGAGACCAATGGGTCCA TGTTCAACCCATACCCGGATCCTTAGTCCTCAATGTCGGAGACATGATCCAGCTGATTACGAACGACAAGTACGAAAGCGTGTACCATAGAGTTGTGCCG AAGAGCAGCGGACCGGCCAGGATTTCGATCCCTTGCTTCTTCCGAAGGCATCATTTGATGGAAGGTAATGAAAAGGTGTATGAACCGATCAAGGAGCTGG TGACGGAGGAGAGCCCTGCGATATATAAGGGGACGAGCGTGTATGAGTATGTGACGTGCTTCAACTCCGTTGGGCTTGACGGCACCACGAAACTGGGACA TTTCAAGATATGA
AA sequence Show only first row Show all	>Lus10040382 pacid=23174206 polypeptide=Lus10040382 locus=Lus10040382.g ID=Lus10040382.BGIv1.0 annot-version=v1.0 MASTKPVASDRQTELKAFDNTKRGVKGLVDAGIKQLPRIFKHDSSVINAEPAVLSKDDAAKLAIPVIDFRGIHEDPRARTAAMKKVHDACSEWGFFQVIN HGIPVSLLESAIDGIRKFHEQDDEAKEELYSRDPTKDVLYNTNFDLYQASAANWRDSLYCNMAPVPPPPHHLPAICKDVVINYSKEVMKLGLTIFELMSE ALGLEPNHLRDMGCSDGLLLSGHYYPECPEPESTFGISKHTDSSFLTVLLQDQSGGLQALYRDQWVHVQPIPGSLVLNVGDMIQLITNDKYESVYHRVVP KSSGPARISIPCFFRRHHLMEGNEKVYEPIKELVTEESPAIYKGTSVYEYVTCFNSVGLDGTTKLGHFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	0	1
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	4.2	0.7723
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002612 [exp]	5.5	0.7719
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	7.5	0.7239
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	8.7	0.6866
					Lus10013881 [exp]	8.9	0.7211
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	10.9	0.6428
					Lus10030782 [exp]	13.6	0.6620
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	17.9	0.6421
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	19.0	0.6421
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Lus10020334 [exp]	19.8	0.6031

Compare expression of checked genes

Lus10040382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.