Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50840 409 / 1e-140 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023501 [exp] 405 / 1e-141 AT5G50840 133 / 9e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219700 [exp] 525 / 0 AT5G50840 454 / 4e-158 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09728 [flax] [poplar] Taxilin Myosin-like coiled-coil protein
Representative CDS sequence Show only first row Show all	>Lus10040383 pacid=23174088 polypeptide=Lus10040383 locus=Lus10040383.g ID=Lus10040383.BGIv1.0 annot-version=v1.0 ATGGAGAATCTAGACGCAAATCAACTTCCTGAAGTGGACTCACTCCCAGATGGATTTGTTGACAGCTCCAGGGAGCCTGTGGCTCCTGCAACCCCAACTA TGGAACAAGAGAAGCTACCCACTCACAACAAGGACGATGATTCCGTGTCAAATCTTCATCACCCTAATTTGGAATTGGAAGCAGGGCTGGAGCTTTCAAA TGAATCAACACCGAAGAGTGAAAGAACTCGAACTTTTCCTGTCCCGCTATCTGAGACTGATGGCTCTGATGCTTCAGGGCAAATGGTAGAATTGCCCGTT GAACAGGATGAAGATATTGTGAGGATGCCTAATCAAGTTGCGGAGGAGGCTTCACATGGAGGTACTAGTGATGAAGCAAAAGAAGGTGTTCACGGGGACA GACAAAGTTTAGAGAAAGCTGTTCCAGCAACTTCAGACTTGCAAATTGCAGATTTGAAGGAAATATCTTTCCCTGAACATATCGAGTTACAAGGCAGCAG GAAAAAAGAATCCTCTGAAAGTAAACGTAAGAATGTGAAAAAGACCTTCAAATCCGAGAAGGAATTTCTGGAGTTCACTTTGAAGTATCAGCAAGTCTTG TCTGAAAGAGATTCTGCTATCATTGTGCGGGATAAGCTTGAGTCACTTTGCAGGGAGTTGCAACGTCAGAACAAAGTACTAATGGATGAGTGCAAACGAG TATCAACCGAAGGACAAAGTTTGAGATTGGATCTATCTGCCAGGTTCCAAGATGCAATTAAGGATGTGAGCAATAAGCTGGAAGAGCAAAAGGAAGACAG TCTTGCTCAGTTAAGGGAAAATGAGATGTTAAGAACCAAGTTGAAGCAACTTGCTGATCAGTATACTCTTTCTGAGCAACACTTTGCACAGAAGTTGAAA CAAAAAAGCTTGGAACTTCAGATTTCTGATCTCAAGATCAAGCAGCATGAGGAAAAATTAGTCCAGGAGCAGTCACAGATGAAAATTTATGCCGAACAGG TGTCTCAGTTACTGGCAACTGAAAAGAATTTGAGGTTGCAATTGACGTCGGATGGGGAAAAGTTCCAACAATTCCAGGAAGCATTAGTGAAGAGCAATGA AGTATTTGAAACATTTAAGCAAGAAATTGAGAAGATGGCGAAATCAATCAAGGAACTCAAGAAGGAGAACACATTTTTGAAGAGTAAATGTGACAAAACA GACGTTACCCTTATCGAGCTGGTTGAGGAGCGTGAGAGATTGAAGAAACAGCTGGAGAAAACAAAGAACCAGAAAGAAAAACTGGAATCATTGTGTAGAT CACTTCAAGCAGAAAGGAAGCAGAGTTCTACTGCCACTCCTATTCCTTCCACTACAAGCAACGTCACCGAGCAAGTTCCTGAATGA
AA sequence Show only first row Show all	>Lus10040383 pacid=23174088 polypeptide=Lus10040383 locus=Lus10040383.g ID=Lus10040383.BGIv1.0 annot-version=v1.0 MENLDANQLPEVDSLPDGFVDSSREPVAPATPTMEQEKLPTHNKDDDSVSNLHHPNLELEAGLELSNESTPKSERTRTFPVPLSETDGSDASGQMVELPV EQDEDIVRMPNQVAEEASHGGTSDEAKEGVHGDRQSLEKAVPATSDLQIADLKEISFPEHIELQGSRKKESSESKRKNVKKTFKSEKEFLEFTLKYQQVL SERDSAIIVRDKLESLCRELQRQNKVLMDECKRVSTEGQSLRLDLSARFQDAIKDVSNKLEEQKEDSLAQLRENEMLRTKLKQLADQYTLSEQHFAQKLK QKSLELQISDLKIKQHEEKLVQEQSQMKIYAEQVSQLLATEKNLRLQLTSDGEKFQQFQEALVKSNEVFETFKQEIEKMAKSIKELKKENTFLKSKCDKT DVTLIELVEERERLKKQLEKTKNQKEKLESLCRSLQAERKQSSTATPIPSTTSNVTEQVPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50840			unknown protein		Lus10040383 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	1.7	0.9156
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	1.7	0.9219
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	2.4	0.9206
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	5.1	0.8772
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	5.6	0.8530
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	6.0	0.8876
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	7.7	0.8928
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	8.9	0.8832
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	9.8	0.8714
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	9.9	0.8832

Compare expression of checked genes

Lus10040383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.