Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52270 226 / 5e-74 Transcription initiation factor IIF, beta subunit (.1) AT1G75510 209 / 3e-67 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040084 [exp] 367 / 4e-129 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1) Lus10023502 [exp] 352 / 3e-122 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1) Lus10030963 [exp] 326 / 1e-113 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1) Lus10033190 [exp] 243 / 3e-80 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) Lus10010631 [exp] 242 / 8e-80 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219800 [exp] 256 / 2e-85 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1) Potri.002G028900 [exp] 252 / 3e-84 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.005G233800 [exp] 246 / 1e-81 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02270 [flax] [poplar] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10040384 pacid=23173807 polypeptide=Lus10040384 locus=Lus10040384.g ID=Lus10040384.BGIv1.0 annot-version=v1.0 ATGGACGAAAATGCATCAGCATCAGGCAAGCCCGCCATCATCACCAACAACAAAAACCAAACCCAAAACACCCGACCCATTGGAGGGTTTCTAGAGACCA GCAAGGCCAAGAGGTCAGTCTGGCTCATGAAATGCCCTTCTCTCGTTTCCCACTCCCTCCGCTCTCCTCTGTCCACTAATTACCTCTCTTCCCCCGTCGC CAAATTCACCATGGAGTTGGACCTCACGGAATCGGGGAATACACCGAAATCATACACTCTGGCAATGTCTGAGGAATTCGTTCCAATGTCTGTGTTTGCC GAGTTATCTCAAGGGAAGATCCCGAACAAATTCAATGTGAAGCCCAATTCCGAGAACCTTGAAAAGTACGGTAAGCTATGTCGCGAAAGGACGAAGAAGT ATATGACCAAGAACAGACAAGTCCAGGTTTTCCTATCATCAACACTTGCCTGGTCTTTTCACTTGCACGCCATTGATAATGACAAAGGAACTCACATGAG ACCTATGCCCGGGATGATGACAACTTCTTTCACCGTACATGAGAAGAAGAAACCGCCGGCCAAAGCATCTGATACGAAAAGGACGAGAAGGGATCGCGGG GAGATGGAAGACATTATGTTCAAGCTATTCGAAAGGCAACCGAATTGGAGTTTGAGACAACTTGTTCAAGAGACGGATCAGCCCGAACTGTTTCTGAAAG ACATGCTGAAGGAGCTTTGCGTGTATATAAGGAAAGGAAAAGACCAGTTTGTCCCAGCTGCAGAAGTTTTGATGACTTGA
AA sequence Show only first row Show all	>Lus10040384 pacid=23173807 polypeptide=Lus10040384 locus=Lus10040384.g ID=Lus10040384.BGIv1.0 annot-version=v1.0 MDENASASGKPAIITNNKNQTQNTRPIGGFLETSKAKRSVWLMKCPSLVSHSLRSPLSTNYLSSPVAKFTMELDLTESGNTPKSYTLAMSEEFVPMSVFA ELSQGKIPNKFNVKPNSENLEKYGKLCRERTKKYMTKNRQVQVFLSSTLAWSFHLHAIDNDKGTHMRPMPGMMTTSFTVHEKKKPPAKASDTKRTRRDRG EMEDIMFKLFERQPNWSLRQLVQETDQPELFLKDMLKELCVYIRKGKDQFVPAAEVLMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	3.0	0.7620
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	4.5	0.7122
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	5.7	0.7549
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	11.7	0.7376
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	19.2	0.6799
AT1G17665			unknown protein		Lus10006153 [exp]	25.3	0.6666
AT4G37920			unknown protein		Lus10029560 [exp]	25.3	0.6893
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	32.3	0.6648
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041334 [exp]	32.4	0.6777
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	32.9	0.6458

Compare expression of checked genes

Lus10040384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.