Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) AT1G76050 75 / 1e-14 Pseudouridine synthase family protein (.1.2) AT5G51140 74 / 2e-14 Pseudouridine synthase family protein (.1.2) AT3G19440 55 / 5e-08 Pseudouridine synthase family protein (.1) AT1G78910 53 / 3e-07 Pseudouridine synthase family protein (.1) AT1G56345 47 / 1e-05 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023503 [exp] 643 / 0 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10017250 [exp] 82 / 1e-16 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 79 / 1e-15 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10022437 [exp] 66 / 3e-11 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10027863 [exp] 54 / 1e-07 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10002811 [exp] 52 / 3e-07 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 49 / 4e-06 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 48 / 1e-05 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10029848 [exp] 47 / 1e-05 AT1G56345 358 / 7e-124 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042000 [exp] 527 / 0 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.002G016800 [exp] 77 / 2e-15 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.015G101300 [exp] 72 / 2e-13 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2) Potri.009G095700 [exp] 57 / 8e-09 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.013G009300 [exp] 48 / 6e-06 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 42 / 0.0005 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10040385 pacid=23174011 polypeptide=Lus10040385 locus=Lus10040385.g ID=Lus10040385.BGIv1.0 annot-version=v1.0 ATGTCTCGGAAGTTCGGCATCCCGTGGCCGGAGCTCAACGAAGGGTTGTTCTACAACGATGTCCTTCCTGCTTCCCAGTCCGGTATATCTCAAACACTCA TAGACTTCTACTCCAGTAAGTACAAAAATTCAGCTCCCACAAAAGGTTGGCTGCAGAGGATTCACAATGGACAGATCACAGTTGATGGAGTTGTTGTAAA AGAACCAAGCACAATCCTCAGGGCTGGTTCTGCTTTGGTTTATCATAGGCGTCCATGGAGGGAGCCTGATGCACCTTACACTTTGAAAATACTATATGAA GATGATGAGATGGTAAGTCATTGTGGTGTCACTGGTTGGTTTGAGCTCACAAGGGTGGTTAGAATTAATGGTGTTTTAGTTGTGCCTCAGGTTGCTTTAA ACAAGCCTTCTGGTTTGCAAGTTTTGCCCGGTGGCCTATTTCAGCAGCGAACTGTTCTAACCCAACTCCACTGGTGGGCAGCCAAGGAAGGATCTTCCTC AGCTAGCCATGGATCACATCCCGTTCCTGTACACCGCTTGGGAAGAGGCACATCAGGAATATTGCTTTGTGCAAAGTCTAAGCTTGCCAAAACTCAACTT GCTGCATATTTTGCTGAGGGGACATCTCTTATTGGAGGCAACAGTAGTGATCATTCTCTGGAGCTTGAGAAAGGAAGGAAAATCTTGAAGATATACCGAG CCCTGGCTGATGGAATAGTCAGCGAAGACATGGTTGTAATCAGGCAACCGATCGGGGTAGTTCGTTATCCCGGAGTGGCTAAAGGACTATACGTTGCTTC TGCCTCAGGAAAACCAGCATTGACCAAAGTTCGAGTACTGGAGAGAGATCTACAAAAAAACTGCAGCTTGGTCGAGGTGAAGATTGAGTCAGGACGCCCA CACCAAATCCGCATTCACCTTTCCTTCATAGGGCATCCACTAGTTGGCGATCCTCTCTACATCACTGGAGGAAAGCCAAGTTGTCTCGATGCCGGACTCA TAAATGAAGACTTCGCAGCAGACGGGGGATATGAAAAACCGACGAAGGCTGTGCCCGGGGACTGCGGTTACTACTTGCATGCACATCAACTAACCCTTAC ACACCCATCTACCCCCAAGGTGATACTGATCACAGCACCTCTTCCGCCGATCTTACGAACAAGCTCAGAGACCCAACTTTGA
AA sequence Show only first row Show all	>Lus10040385 pacid=23174011 polypeptide=Lus10040385 locus=Lus10040385.g ID=Lus10040385.BGIv1.0 annot-version=v1.0 MSRKFGIPWPELNEGLFYNDVLPASQSGISQTLIDFYSSKYKNSAPTKGWLQRIHNGQITVDGVVVKEPSTILRAGSALVYHRRPWREPDAPYTLKILYE DDEMVSHCGVTGWFELTRVVRINGVLVVPQVALNKPSGLQVLPGGLFQQRTVLTQLHWWAAKEGSSSASHGSHPVPVHRLGRGTSGILLCAKSKLAKTQL AAYFAEGTSLIGGNSSDHSLELEKGRKILKIYRALADGIVSEDMVVIRQPIGVVRYPGVAKGLYVASASGKPALTKVRVLERDLQKNCSLVEVKIESGRP HQIRIHLSFIGHPLVGDPLYITGGKPSCLDAGLINEDFAADGGYEKPTKAVPGDCGYYLHAHQLTLTHPSTPKVILITAPLPPILRTSSETQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	6.3	0.7453
					Lus10000293 [exp]	10.3	0.6802
					Lus10038468 [exp]	10.4	0.7061
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	13.4	0.7641
					Lus10038470 [exp]	24.2	0.6894
AT2G26270			unknown protein		Lus10009795 [exp]	30.0	0.7003
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	41.0	0.7042
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	41.2	0.6961
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	44.5	0.6872
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	45.2	0.7027

Compare expression of checked genes

Lus10040385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.