Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07990 715 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 671 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 530 / 0 SCPL29 serine carboxypeptidase-like 29 (.1) AT4G30610 530 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 506 / 8e-178 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 496 / 8e-174 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35770 490 / 9e-172 SCPL28 serine carboxypeptidase-like 28 (.1) AT2G24010 464 / 4e-162 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 449 / 5e-155 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 444 / 6e-153 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023505 [exp] 922 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 563 / 0 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10015489 [exp] 525 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 525 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 508 / 4e-178 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10010190 [exp] 437 / 1e-150 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 434 / 2e-149 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 398 / 2e-135 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010191 [exp] 392 / 1e-132 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041800 [exp] 781 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 778 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220200 [exp] 606 / 0 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 597 / 0 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.018G103100 [exp] 560 / 0 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.006G183200 [exp] 540 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 538 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 508 / 8e-179 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 506 / 6e-178 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.001G261100 [exp] 463 / 2e-160 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10040387 pacid=23174150 polypeptide=Lus10040387 locus=Lus10040387.g ID=Lus10040387.BGIv1.0 annot-version=v1.0 ATGGATAGTTCCATATTCTTTGTTCTGTGTGTCTCTTCCTTTTTCCTCATTTGTTGCTGCACATCTGTCCCACTTCAAGATCAGGAGAGAGACAAGATTG ATTCTTTGCCAGGGCAGCCTGAACATGTAGATTTCAATCAGTACTCCGGTTATGTTACTGTGAACCAAAAAGCTGGAAGGGCTTTGTTTTACTGGCTTGT GGAGTCTCCAAAAAGTAGGGAGCCTGATTCAAGGCCACTTGTTCTGTGGCTCAATGGTGGTCCTGGTTGCTCTTCTATTGCTTATGGAGCTGCTGAAGAA ATTGGACCTTTCCACATCAGGCCGGATGGGAAAAGTCTTTACTTGAACCCTTATTCTTGGAACAAGTTGGCCAATTTGCTGTTCCTTGAATCGCCAGCTG GAGTTGGGTTTTCATATTCCAACACAACATCTGAATATTACAAGGCTGGTGATAAGAGCACTGCTGCAGATTCATATACATTTCTTGTCAATTGGTTTGA GAGGTTTCCTCAGTACAAACATAGAGAATTTTACATTGCTGGAGAAAGCTATGCAGGGCATTATGTTCCTCAGTTGTCTCAGGTTATATATGAAAAGAAC ATTGGAGTTAAGAACCCAGTTATTAACTTCAAGGGATTTATGGTTGGCAATGCAGTCACAGATGATTACCATGATTACATTGGCACATTTGAGTACTGGT GGACTCATGGTCTCATTTCAGATTCTACCTATAAGATATTGCGCGATAGTTGTGATAAAGGTTCGTCTCAACACCCATCATCAGATTGTACGAAGGCCCT TAAAACTGCAGAAATCGAGCAAGGAAACATCGATCCGTATAGCATTTTCACTAAACCTTGCAGCAGTGCTGCATCGCTCAAGCGCAAATTAAGGGGCCAT TATCCATGGATGTCGAGGGCGTATGATCCTTGCACTGAGAGGTATTCAAAGCAGTACTTCAATCTTCCTGAAGTTCAGAAAGCACTCCATGCAAATGTGA CTGGACTTCCTTACACCTGGGAAACATGCAGTGACATTGTAGGGATTTACTGGGCAGATTCCCCACTTTCTATGCTGCCTATATATAAGCAACTCATTGC TGCTGGTGTCAGGATATGGGTCTTTAGTGGAGACACAGATTCAGTGGTTCCTGTGACGGCAACGAGATACTCGATTGATGCACTGAAGCTACCCACCATC ACCAACTGGAATCCATGGTACGACAATGGAAGGGTTGGGGGATGGAGCCAAGTATACAAAGGGCTGACATTCACGACAGTAGCAGGAGCTGGACATGAAG TGCCTCTCCATCGCCCTCGACAAGCTTTCATTCTTTTCCGATCGTTTCTGGAGAATAAGGCACTTGCCTAG
AA sequence Show only first row Show all	>Lus10040387 pacid=23174150 polypeptide=Lus10040387 locus=Lus10040387.g ID=Lus10040387.BGIv1.0 annot-version=v1.0 MDSSIFFVLCVSSFFLICCCTSVPLQDQERDKIDSLPGQPEHVDFNQYSGYVTVNQKAGRALFYWLVESPKSREPDSRPLVLWLNGGPGCSSIAYGAAEE IGPFHIRPDGKSLYLNPYSWNKLANLLFLESPAGVGFSYSNTTSEYYKAGDKSTAADSYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLSQVIYEKN IGVKNPVINFKGFMVGNAVTDDYHDYIGTFEYWWTHGLISDSTYKILRDSCDKGSSQHPSSDCTKALKTAEIEQGNIDPYSIFTKPCSSAASLKRKLRGH YPWMSRAYDPCTERYSKQYFNLPEVQKALHANVTGLPYTWETCSDIVGIYWADSPLSMLPIYKQLIAAGVRIWVFSGDTDSVVPVTATRYSIDALKLPTI TNWNPWYDNGRVGGWSQVYKGLTFTTVAGAGHEVPLHRPRQAFILFRSFLENKALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	0	1
AT2G41150			unknown protein		Lus10018111 [exp]	1.0	0.8095
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	5.5	0.7933
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	6.2	0.7891
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	8.4	0.7666
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	10.4	0.7862
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	11.3	0.7417
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	12.4	0.7392
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	13.3	0.7375
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	17.0	0.7608
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	18.3	0.7573

Compare expression of checked genes

Lus10040387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.