Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39190 316 / 1e-99 ATATH8 Protein kinase superfamily protein (.1.2) AT1G71810 133 / 2e-33 Protein kinase superfamily protein (.1) AT4G31390 123 / 5e-30 Protein kinase superfamily protein (.1.2) AT5G24970 121 / 3e-29 Protein kinase superfamily protein (.1.2) AT1G79600 110 / 2e-25 Protein kinase superfamily protein (.1) AT3G24190 106 / 3e-24 Protein kinase superfamily protein (.1) AT5G64940 100 / 3e-22 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 91 / 4e-19 Protein kinase superfamily protein (.1.2.3) AT5G05200 74 / 5e-14 Protein kinase superfamily protein (.1) AT5G50330 74 / 7e-14 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023508 [exp] 504 / 2e-174 AT2G39190 487 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 428 / 2e-142 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 309 / 5e-97 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 128 / 2e-31 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 116 / 1e-27 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 110 / 1e-25 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 109 / 3e-25 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10036636 [exp] 106 / 4e-24 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 98 / 2e-21 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221000 [exp] 360 / 5e-116 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 129 / 4e-32 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 121 / 2e-29 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 110 / 1e-25 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.001G050700 [exp] 107 / 1e-24 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.005G083200 [exp] 106 / 4e-24 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G014000 [exp] 102 / 4e-23 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 100 / 2e-22 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 90 / 5e-19 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G003600 [exp] 72 / 3e-13 AT5G24810 956 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10040390 pacid=23174105 polypeptide=Lus10040390 locus=Lus10040390.g ID=Lus10040390.BGIv1.0 annot-version=v1.0 ATGGCTATTGGCAATTTCAGTTACTTTGGGGAGGTGATGAGGAAGGATTTTGATTTCTTGAGTAAAGTAGTAGGCAAGGGAATTGACTGGGCTAACGATG CGTTTCGGATTCCGCAAGTGGCCAAGGCGGTGGATGATGTTGTTTGGATGCGTAACCTCGAGGATCCTGAAGCTGCAAAGATGGAGAAGCAAACTTGGCC TCAGCCTTCTTATCCAGAACTTTCTGGCATGGATTTACTCATGGCTGACCTCCAAGCCTTCCAAACCTATGCCGATTACTTCTACTGCTTGTCCAAGACT TGTTCCAAGCCACTCCCTGAAGTCTATGATCCCCAAACTGTTTCTGACTACTTCAATTGCAGGCCTCATGTGGTAGCCTTTCGACTTCTTGAGGCTCTTT CTGGGCTGCATGATCAAATACCTCCCTTTCCTTGGACCATGGCGATGAAAATCATCGAGGAGGAGCTAGGAGCTCCTGTTGCATCATCTTTTAGCTACTT ATCTGAGGAACCAGTTGGTGCAGCATCGTTTGGCCAGGTTTATCGTGGAAAGACTCTTGATGGCCGTATTGTGGCAGTGAAAGTTCAGCGACCTAATCTG CGTTATGTGGTAGTTCGAGATATTTACATAATCCGGACTGGGCTGGGTCTGTTGCAAAAGATTGGGAATGTAGAAAGTGACCTTCCTCGGTATGCTGATG AATTCGGAAAGGGCCTAGTTGGTGAATTAGATTACTCTATTGAAGCTGACAATGCATCTAAATTTCGGGAAGCACATTCTTCTTTCACAATCATGCAAAT TCCAAGGGTTTTCCGATATCTAAGCTGGAAAAGAGTTCCGACGATGGAGTGGGTAGCTGGTGAAAGTCCAAATGATTTGCTTACTGCATCAACTTCCAAC GCCAAGGATTTCGTCTCAGAAAGAGAGAAGACTGAAGCAACTAGCCATTTACTTGATCTGGAGTTGGAAGATGCCTTAGGAGAGGTAGAATTCAGAGACG GAATTCCTGACATCAAGTTCAGTAAGGATGGGGCTTCGTTAGTCCGACGAGCGGTCTCCAAGGAAGCAATGCCCTTGAGACAGCAACTGTGCAGGGTCAT TGCCGATGTCATGCACCAATGGATCAACAAAGAGACGAGGGCTCCATCTTCTTCCTCCAGATCAGTCGTTGATTATCAAGCAATCCTTAGAGATAGACGA CTAAAAGTGATATTTCTCAGAATACTCGGCTCTACAAGGAAAGATCCCGCGCTGATGCTTAAGCTTTGCTGGACTTCATTCATCATCATGGTCACTGCTT CAGCACTTGCATTTCGTCAAGCTCTGGTCTCTTTCTCCGAAACCTTCTTCAGCTCTCTGCCTCTTTCTCCCAAGCGTGTGGCTTTTACTCCTTGA
AA sequence Show only first row Show all	>Lus10040390 pacid=23174105 polypeptide=Lus10040390 locus=Lus10040390.g ID=Lus10040390.BGIv1.0 annot-version=v1.0 MAIGNFSYFGEVMRKDFDFLSKVVGKGIDWANDAFRIPQVAKAVDDVVWMRNLEDPEAAKMEKQTWPQPSYPELSGMDLLMADLQAFQTYADYFYCLSKT CSKPLPEVYDPQTVSDYFNCRPHVVAFRLLEALSGLHDQIPPFPWTMAMKIIEEELGAPVASSFSYLSEEPVGAASFGQVYRGKTLDGRIVAVKVQRPNL RYVVVRDIYIIRTGLGLLQKIGNVESDLPRYADEFGKGLVGELDYSIEADNASKFREAHSSFTIMQIPRVFRYLSWKRVPTMEWVAGESPNDLLTASTSN AKDFVSEREKTEATSHLLDLELEDALGEVEFRDGIPDIKFSKDGASLVRRAVSKEAMPLRQQLCRVIADVMHQWINKETRAPSSSSRSVVDYQAILRDRR LKVIFLRILGSTRKDPALMLKLCWTSFIIMVTASALAFRQALVSFSETFFSSLPLSPKRVAFTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	0	1
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	4.0	0.9303
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	4.9	0.9176
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001604 [exp]	6.5	0.9118
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	6.5	0.9170
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	8.5	0.9014
AT5G56850			unknown protein		Lus10008560 [exp]	8.5	0.9118
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	12.2	0.9076
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	12.5	0.9161
AT2G04360			unknown protein		Lus10012308 [exp]	13.6	0.9151
AT5G16030			unknown protein		Lus10017573 [exp]	16.1	0.8566

Compare expression of checked genes

Lus10040390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.