Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 302 / 3e-99 Protein kinase superfamily protein (.1) AT3G09010 301 / 6e-99 Protein kinase superfamily protein (.1) AT1G56140 294 / 5e-90 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 290 / 1e-88 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 287 / 2e-87 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 281 / 3e-85 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 276 / 2e-83 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 271 / 1e-81 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 269 / 3e-81 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 269 / 5e-81 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023510 [exp] 665 / 0 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10026503 [exp] 343 / 9e-116 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 343 / 1e-115 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10042460 [exp] 319 / 4e-106 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 315 / 5e-104 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 314 / 6e-104 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 315 / 7e-104 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10004825 [exp] 290 / 1e-94 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 286 / 4e-93 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221400 [exp] 392 / 4e-135 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.008G040800 [exp] 338 / 2e-114 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 329 / 7e-110 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 326 / 5e-109 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 313 / 8e-104 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 316 / 1e-103 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 313 / 1e-103 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 310 / 1e-102 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 297 / 1e-97 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 290 / 6e-95 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040392 pacid=23174144 polypeptide=Lus10040392 locus=Lus10040392.g ID=Lus10040392.BGIv1.0 annot-version=v1.0 ATGGGGAGGATGGAGAAGGTCTTGAGCAGCTTGAAGAAAAAGCTCCGAGATTCGTCGACGAGAAAAAGCACCAAGACAACTAGTAGCAGAAGAAGCAAGA ACACCAGCAAGTCATCATCTTCCTATTTCTCCAAATGCTTCAATTCTTCTTCTTCCTCCTCTGATCATCATGTTCCGACAACTGACGACCACAAACAACA TCCTGCAGCTTCTCCCTCTTCAGCAGCAGCAGGTGGAGCAGCAGGTGCACAAAATATGCTGGAAAATTCAAATGCATTCACATTCGACGAACTGGATGTA GCCACCAACCATTTCCATCCCTCGAACAGGATCGGGGAAGGTGGCTTCGGCTCCGTTTACAAGGGGAGGTTAGAAGATGGGAGAAGGGTGGCAATAAAGG TATTGTCAGCAGGGTCAAGACAAGGAGACAGGGAGTTCATGTCGGAATTAGCCACGCTGTCTAACATTACCCACGACAACCTCGTCCACCTCCTTGGAGG CTGTGTCAAAGGGCCTCGTAGAATGCTTGTCTACGAATACGTGGAGAAGGGCAACCTTTTCTATAATCTCCTGGATGAGAAGGGCAGGAGTAGTAGCATG TTCATCAGTTGGGAAGTGAGGAAGGAAATCGCAATGGGGATTGCAGCTGGACTTGCTTACTTGCACGAGGAGGTCAAGCCTCATATAGTCCATCGTGACA TCAAGGCCACCAACATACTCCTCGATCACAATCTTAGACCGAAGATCTCTGATTTCGGGCTCTCCAAGTTCTTTCCCGATGGTATTACCCACATCACCAC CCGAGTTGCAGGCACATTAGGGTACCTGGCACCGGAGTACGCAATAAGCGGGCATTTGACGAGGAAACTAGACGTGTACAGCTTTGGGGTTCTCCTCCTA GAAATAATAAGCGGCCTAACCGCTGTAGACTTTGATCAAACACTTGGTGAACAATACTTCCTAGTGGAGAAGGCGTATCAGCTCTACAAATCCAAACAGC TCCTCCAACTTGTGGATCCAACCCTCATCTTACACGACTCAAACACGCCGGAAGCAGAACGATTCCTCAGAGTTGCTCTGCTATGCCTACAGGAAAAGAG CAGCTTACGCCCCACCATGTCAGCAGCTCTGAAGATGATGAGAAAAGATTACACCACGACAACAGAGGAAGAGGAGATTGCGGAGCCTGGGCTTATTGCA GACTTCATGGCAGTTAAAATCCACCGGCAGCAAGATCGGCGAATGCAGGACAGCACGCCGAATTCTGCAGCTGGTACTCCGCAACGACTGACGTCCGTCC CCGCTTCGTAA
AA sequence Show only first row Show all	>Lus10040392 pacid=23174144 polypeptide=Lus10040392 locus=Lus10040392.g ID=Lus10040392.BGIv1.0 annot-version=v1.0 MGRMEKVLSSLKKKLRDSSTRKSTKTTSSRRSKNTSKSSSSYFSKCFNSSSSSSDHHVPTTDDHKQHPAASPSSAAAGGAAGAQNMLENSNAFTFDELDV ATNHFHPSNRIGEGGFGSVYKGRLEDGRRVAIKVLSAGSRQGDREFMSELATLSNITHDNLVHLLGGCVKGPRRMLVYEYVEKGNLFYNLLDEKGRSSSM FISWEVRKEIAMGIAAGLAYLHEEVKPHIVHRDIKATNILLDHNLRPKISDFGLSKFFPDGITHITTRVAGTLGYLAPEYAISGHLTRKLDVYSFGVLLL EIISGLTAVDFDQTLGEQYFLVEKAYQLYKSKQLLQLVDPTLILHDSNTPEAERFLRVALLCLQEKSSLRPTMSAALKMMRKDYTTTTEEEEIAEPGLIA DFMAVKIHRQQDRRMQDSTPNSAAGTPQRLTSVPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	6.9	0.9088
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	8.2	0.9112
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	9.9	0.8820
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	13.8	0.9162
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	15.5	0.9168
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	15.9	0.9079
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	22.6	0.8761
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	25.0	0.9061
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	30.5	0.9090
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	30.5	0.9089

Compare expression of checked genes

Lus10040392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.