Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03190 235 / 1e-78 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT5G17220 232 / 2e-77 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT2G30860 205 / 9e-67 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 199 / 1e-64 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G62760 187 / 6e-60 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G02930 154 / 4e-47 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT4G02520 154 / 1e-46 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G47730 153 / 8e-46 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02930 148 / 1e-44 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02950 147 / 7e-44 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023511 [exp] 347 / 1e-122 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10020735 [exp] 229 / 3e-76 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 227 / 1e-75 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 219 / 2e-72 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 211 / 2e-69 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 209 / 2e-68 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 187 / 6e-60 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10005634 [exp] 165 / 4e-51 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 151 / 7e-46 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 303 / 2e-105 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 201 / 3e-65 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 191 / 2e-61 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 182 / 5e-58 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 175 / 3e-55 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207093 [exp] 171 / 2e-53 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 160 / 3e-49 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 159 / 4e-49 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.005G182000 [exp] 57 / 1e-09 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) Potri.004G232600 [exp] 53 / 2e-08 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040393 pacid=23174060 polypeptide=Lus10040393 locus=Lus10040393.g ID=Lus10040393.BGIv1.0 annot-version=v1.0 ATGGTAGTGAAAGTGTATGGTCCGTACAAGGCCGCATGTCCACAGAGGGTACTGGCTTGCCTTCTGGAGAAACAAGTCGAGTTCGAAGTCGTCCCCGTCG ATCTCGACTCCGGCCACCAAAAACTCCCCGATTACGTCGCCAAACAGCCATTCGGGCAGGTTCCCTACATTGAGGATGGCGACCTTAAGCTTTTCGAATC GAGGGCAATAATCCGGTATTACGCTGCAAAATACGCGGACCAGGGAGCGGACCTGCTGGGCCAGACATTAGAAGAGAAGGCCCTGGTGGACCAGTGGCTG GAAGTGGAGGCCCATAACTTTAACGAGCCCGTTTACGCGGCGGTGCTGCAGCTGGTGATTCTGCCGCGGATGGGGTTGAAGGGTGACGTGGCGGTGATCC GAGACAGCGAGGAGAAGATAGGGAAGGTGCTTGACATCTACGAACGGAGGCTGTCGGAGACCAAGTACCTCGCCGGGGAAAATTTCACCCTGGCGGATCT CAGCCACCTTCCGGGGATGAGGTACCTGACGAACGAGGCTGGGATGGGTCACTTGGTGGCGGAGCGGAAGAAGGTGAATGCTTGGTGGGTGGATATCTCC GGCCGGCCTGCTTGGAAGAAGCTGATTTCCATGGCCGCTGCAGCCGCCGCCGCCGCCGATGTTTGA
AA sequence Show only first row Show all	>Lus10040393 pacid=23174060 polypeptide=Lus10040393 locus=Lus10040393.g ID=Lus10040393.BGIv1.0 annot-version=v1.0 MVVKVYGPYKAACPQRVLACLLEKQVEFEVVPVDLDSGHQKLPDYVAKQPFGQVPYIEDGDLKLFESRAIIRYYAAKYADQGADLLGQTLEEKALVDQWL EVEAHNFNEPVYAAVLQLVILPRMGLKGDVAVIRDSEEKIGKVLDIYERRLSETKYLAGENFTLADLSHLPGMRYLTNEAGMGHLVAERKKVNAWWVDIS GRPAWKKLISMAAAAAAAADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	2.2	0.9592
					Lus10021242 [exp]	3.0	0.9439
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	3.7	0.9451
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	5.5	0.9325
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	5.7	0.9367
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	6.0	0.9292
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009130 [exp]	6.2	0.8223
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	7.1	0.8837
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	8.0	0.9033
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	8.1	0.8791

Compare expression of checked genes

Lus10040393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.