Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39220 640 / 0 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 636 / 0 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 586 / 0 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 292 / 5e-95 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37060 152 / 3e-41 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 138 / 4e-36 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT2G26560 133 / 2e-34 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT5G43590 119 / 3e-29 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37050 112 / 9e-27 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041402 [exp] 746 / 0 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 740 / 0 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 725 / 0 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 359 / 1e-120 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 228 / 3e-71 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10038350 [exp] 224 / 2e-70 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10036212 [exp] 156 / 2e-43 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10009340 [exp] 146 / 3e-39 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 126 / 1e-31 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040500 [exp] 749 / 0 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 747 / 0 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 402 / 2e-137 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 393 / 7e-134 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.005G210100 [exp] 289 / 6e-94 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 282 / 3e-91 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.007G042200 [exp] 150 / 2e-40 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.002G128300 [exp] 149 / 3e-40 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014401 [exp] 137 / 7e-36 AT4G37060 212 / 2e-64 phospholipase A IVB, PATATIN-like protein 5 (.1.2) Potri.017G134151 [exp] 134 / 6e-35 AT2G26560 509 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10040394 pacid=23174007 polypeptide=Lus10040394 locus=Lus10040394.g ID=Lus10040394.BGIv1.0 annot-version=v1.0 ATGGAAATCGCTTGTCACCAATCTTTAGAAATACAAGAGCCCAGCATCGACACCGACAAACTCAGCTACGAAATCTTCTCCATCCTGGAAAGCAAGTTCC TTTTCGGCTACGACGATCAGAAGCTCTGGGTTCCAAAGCAGATCTCTCCGCCGCCACCGGCGGCGGAAAACAAACCCGAACCTCTGACTCCCTCAATCGC CGCCGCCGGAGACGGGGTCAATTCAATAAAAAACCAGCGGGGAAAAATCTGCATACTCTCCATCGACGGCGGAGGGATGAGAGGAATCCTCGCTGGAAAA GCTCTGGCGTATCTCGAACAGGCTCTGAAAACGAAATCGAACAATCCCGACGCGAGAATCTCCGACTACTTCGACGTAGCAGCGGGGACGGGCGTCGGTG GCATCTTCACGGCGATGCTTTTCGGGACCAGAGACCAGAGCCGTCCGATCATGAAAGCCGACGAGACGTGGAAGTTTCTGGCGGAGAACGGGAAACGTTT CTACCGGTCGGGAAACGACGGCGGGTTCTTGAAACGGGCGTTTAATAAAACCGGGTCGGGTTCTGCCGGGTTGGAAAAGGCGATGAAAGAGACTTTCGCA GAGAAGAAAGGTCGTCAGTTGACGCTCAAGGATACATTAAAGCCTGTTTTGATCCCTTGCTACGACCTTTCCAGTACGGCGCCGTTTCTCTTCTCTAGAG CCGACGCTCTGGAGACGGACAGTTTCGATTTCCGTTTATGGGAGGTTTGCCGGGCGACGTCGGCCGAACCGGGGGTATTCGACCCGGTTCAGTTAAAGTC AATCGACGGTCGGACCAGGTGTTTAGCCGTCGACGGCGGGTTGGCGATGAGCAACCCGACGGCGGCGGCGATCACGCATGTGCTGCACAACAAACAAGAG TTCCCTTTCGTGAGAGGGGTGGAGGATTTGCTGGTGTTGTCGCTGGGTACTACTGGGCAGCTGTTGGAAGTGAGGTACGATTACGAGCAGGTGAAAACAT GGAGGGCCAAGCACTGGGCGAGGCCCATGGCGAGAATAGCCGGAGATGTTTCGGCTGATTCGGTGGACCAGGCGGTGGCCATGGCATTCGGTCAATGTCG GAGCAGTAACTACGTCAGGATTCAGGCGAACGGGTCCAGCCTAGGCAGGTGTGAAGCCAATGTTGACACGGACCCAGATTCAAAGAACGTGAAAATGCTG GTGGGAATGGCAGAGGAGATGTTAAAGCAGAAAAATGTGGAGTCGGTGCTATTTGGGGGTAAGAGAATAGGAGAGCAGAGTAATTTCGAGAAGCTGGACT GGTTTGCAGGTGAACTTGTGCAAGAACATCAGAGGAGGAGCTGCAGAATTGCTCCCACTGTTGCTTTCAAGCAACTTACTACCAAAATTTAA
AA sequence Show only first row Show all	>Lus10040394 pacid=23174007 polypeptide=Lus10040394 locus=Lus10040394.g ID=Lus10040394.BGIv1.0 annot-version=v1.0 MEIACHQSLEIQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWVPKQISPPPPAAENKPEPLTPSIAAAGDGVNSIKNQRGKICILSIDGGGMRGILAGK ALAYLEQALKTKSNNPDARISDYFDVAAGTGVGGIFTAMLFGTRDQSRPIMKADETWKFLAENGKRFYRSGNDGGFLKRAFNKTGSGSAGLEKAMKETFA EKKGRQLTLKDTLKPVLIPCYDLSSTAPFLFSRADALETDSFDFRLWEVCRATSAEPGVFDPVQLKSIDGRTRCLAVDGGLAMSNPTAAAITHVLHNKQE FPFVRGVEDLLVLSLGTTGQLLEVRYDYEQVKTWRAKHWARPMARIAGDVSADSVDQAVAMAFGQCRSSNYVRIQANGSSLGRCEANVDTDPDSKNVKML VGMAEEMLKQKNVESVLFGGKRIGEQSNFEKLDWFAGELVQEHQRRSCRIAPTVAFKQLTTKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	0	1
AT1G60160			Potassium transporter family p...		Lus10012993 [exp]	2.0	0.9200
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	2.6	0.9314
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	3.5	0.9102
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	3.7	0.9257
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	4.9	0.9147
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	7.1	0.8956
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	7.3	0.9114
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	8.5	0.9244
AT1G67623			F-box family protein (.1)		Lus10037978 [exp]	8.7	0.9007
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	9.8	0.9123

Compare expression of checked genes

Lus10040394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.