Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040396 [exp] 94 / 9e-25 AT5G54740 62 / 2e-12 seed storage albumin 5 (.1) Lus10023513 [exp] 76 / 1e-17 AT5G54740 60 / 1e-11 seed storage albumin 5 (.1) Lus10040397 [exp] 73 / 9e-17 ND 39 / 5e-04 Lus10040411 [exp] 57 / 2e-10 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1) Lus10023525 [exp] 49 / 1e-07 AT5G54740 39 / 3e-04 seed storage albumin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134600 [exp] 43 / 2e-05 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10040395 pacid=23173853 polypeptide=Lus10040395 locus=Lus10040395.g ID=Lus10040395.BGIv1.0 annot-version=v1.0 ATGGCAAAGTTGATGAACCTAGCAGTAGCCGTAGCGGCAGCATTATTCCTTTTCCTCATCGTAGTCGACGCATCGATCCGTACAACAGTAATCATCGACG ACGAGGAGCCTAACCAAGGCAGCGGTGGCCAAGAACAACAGCAGTGCGAGCAGGAGTTCCAGGAGCACGAGATGCTGAGGCCTTGCCAGAATTACTTGTG GGACCAGGTCCAGAGAGGCGGCAGCGGCGGCAGTGGAGGAGGGCAACAGGGAGAACACTTCGAGAGGTGCTGTGATCAGCTTAGGGATATGAGAGCCGAG TGCTCATGCAGGGGACTCGAGCGTGTCATTGGCCAGATGCGGCAGGACATTCGGCAGCGTGGACAGCAGCAGGAGAGTCGGAGGATGATCCAGAAAGGTG TGGGCATTGCTAGGGACCTTCCTCAACAGTGTCGTGCTGATCCAAGGCAATGTGAGATTCCGGGTCAGCAGCAGAAACCTGCATGGTTTTTTTAG
AA sequence Show only first row Show all	>Lus10040395 pacid=23173853 polypeptide=Lus10040395 locus=Lus10040395.g ID=Lus10040395.BGIv1.0 annot-version=v1.0 MAKLMNLAVAVAAALFLFLIVVDASIRTTVIIDDEEPNQGSGGQEQQQCEQEFQEHEMLRPCQNYLWDQVQRGGSGGSGGGQQGEHFERCCDQLRDMRAE CSCRGLERVIGQMRQDIRQRGQQQESRRMIQKGVGIARDLPQQCRADPRQCEIPGQQQKPAWFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	0	1
					Lus10014737 [exp]	2.2	1.0000
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	3.2	1.0000
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	3.9	1.0000
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	4.5	1.0000
					Lus10021773 [exp]	5.0	1.0000
					Lus10039552 [exp]	6.0	1.0000
					Lus10012677 [exp]	6.3	0.9903
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	6.5	1.0000
					Lus10019558 [exp]	6.9	1.0000
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	7.3	0.9920

Compare expression of checked genes

Lus10040395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.