Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023513 [exp] 149 / 5e-46 AT5G54740 60 / 1e-11 seed storage albumin 5 (.1) Lus10040395 [exp] 87 / 5e-22 AT4G27170 60 / 1e-11 seed storage albumin 4 (.1) Lus10040397 [exp] 57 / 9e-11 ND 39 / 5e-04 Lus10040411 [exp] 58 / 1e-10 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1) Lus10023514 [exp] 51 / 5e-09 AT5G54740 41 / 1e-05 seed storage albumin 5 (.1) Lus10023525 [exp] 44 / 8e-06 AT5G54740 39 / 3e-04 seed storage albumin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134600 [exp] 56 / 2e-10 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040396 pacid=23174179 polypeptide=Lus10040396 locus=Lus10040396.g ID=Lus10040396.BGIv1.0 annot-version=v1.0 ATGGCAAAGCTGATGAGCCTAGCAGCCGTAGCAACGGCATTCCTCTTCCTCATTGTGGTGGACGCATCCGTCCGAACCACAGTGATCATCGACGAGGACA CCAACCAAGGCCGCGGTGGCCAAGGTGGGCAAGGACAGCAGCAGCAATGCGAGAAGCAGATCCAGGAGCAAGACTACCTGAGGAGCTGCCAGCAGTTCCT GTGGGAGAAAGTCCAGAAGGGCGGCCGCAGCTACTACTACAACCAAGGCCGTGGAGGAGGGCAACAGAGCCAGCACTTCGATAGCTGCTGCGATGATCTT AAGCAATTGAGGAGCGAGTGCACATGCAGGGGACTGGAGCGTGCAATCGGCCAGATGAGGCAGGACATCCAGCAGCAGGGACAGCAGCAGGAAGTTGAGA GGTGGGTCCAGCAAGCTAAACAAGTCGCTAGGGACCTTCCGGGACAGTGCGGCACCCAGCCTAGCCGATGCCAGCTCCAGGGGCAGCAGCAGTCTGCATG GTTTTGA
AA sequence Show only first row Show all	>Lus10040396 pacid=23174179 polypeptide=Lus10040396 locus=Lus10040396.g ID=Lus10040396.BGIv1.0 annot-version=v1.0 MAKLMSLAAVATAFLFLIVVDASVRTTVIIDEDTNQGRGGQGGQGQQQQCEKQIQEQDYLRSCQQFLWEKVQKGGRSYYYNQGRGGGQQSQHFDSCCDDL KQLRSECTCRGLERAIGQMRQDIQQQGQQQEVERWVQQAKQVARDLPGQCGTQPSRCQLQGQQQSAWF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040396 [exp]	0	1
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	4.2	0.7346
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029185 [exp]	15.6	0.8315
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	19.9	0.7166
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	26.7	0.7033
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	31.2	0.7143
					Lus10003448 [exp]	36.0	0.6985
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	36.5	0.6858
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	44.9	0.6796
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025762 [exp]	45.7	0.6682
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	58.3	0.6684

Compare expression of checked genes

Lus10040396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.