Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040396 [exp] 71 / 5e-16 AT5G54740 62 / 2e-12 seed storage albumin 5 (.1) Lus10023513 [exp] 63 / 5e-13 AT5G54740 60 / 1e-11 seed storage albumin 5 (.1) Lus10040395 [exp] 62 / 2e-12 AT4G27170 60 / 1e-11 seed storage albumin 4 (.1) Lus10040411 [exp] 61 / 5e-12 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134600 [exp] 62 / 9e-13 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10040397 pacid=23173986 polypeptide=Lus10040397 locus=Lus10040397.g ID=Lus10040397.BGIv1.0 annot-version=v1.0 ATGACAAAGCTGAGGATCGTCATGAGCTTGGCAGCTCTAGCAGCGGCATTGTTCCTGTTGGTCTTCGATGCATCCCAAGTCCGAACCATGGTGATCGAGG AGCCCACTAACCAAGGGCAGCAACATCAGGATTGTGGGCAGGAGATCCAGCAGCAAGACACTCTGATACACTGTCAGGACTACATGTGGGAGCAGGTCCA GAGAGGAGGCAGTCGACAGGGGCAACCACACTTCGAGACTTGTTGCGATCAGCTGAGCGATCTCAGAGTCGAGTGCACATGCGAGGGATTGGGGCGGGCC ATCAACCAGATGCAGCAGAAGCCGCAGCAGAGCGGCCAAAAGTGGTTTGTGGAAGCTCTGGACCTCGCCAGGGACCTTCCTATCGAATGCAGCATCGCCC CTATCCGCTGCATTTGGGGTACCCTAATACGATGA
AA sequence Show only first row Show all	>Lus10040397 pacid=23173986 polypeptide=Lus10040397 locus=Lus10040397.g ID=Lus10040397.BGIv1.0 annot-version=v1.0 MTKLRIVMSLAALAAALFLLVFDASQVRTMVIEEPTNQGQQHQDCGQEIQQQDTLIHCQDYMWEQVQRGGSRQGQPHFETCCDQLSDLRVECTCEGLGRA INQMQQKPQQSGQKWFVEALDLARDLPIECSIAPIRCIWGTLIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040397 [exp]	0	1
					Lus10006918 [exp]	2.0	1.0000
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	3.2	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	3.9	1.0000
					Lus10027066 [exp]	4.9	1.0000
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	6.0	0.9971
					Lus10007508 [exp]	6.3	1.0000
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009399 [exp]	6.9	0.9823
AT1G04670			unknown protein		Lus10004041 [exp]	6.9	1.0000
					Lus10013963 [exp]	7.2	0.9587
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	7.3	0.9983

Compare expression of checked genes

Lus10040397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.