Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54820 462 / 4e-166 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT3G53420 444 / 9e-159 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37170 443 / 3e-158 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 439 / 7e-157 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G39010 434 / 1e-154 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 431 / 1e-153 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT5G60660 428 / 3e-152 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT4G35100 426 / 1e-151 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 376 / 5e-132 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 366 / 4e-128 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023515 [exp] 552 / 0 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10023184 [exp] 460 / 6e-165 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 449 / 1e-160 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 430 / 4e-153 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 426 / 1e-151 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 426 / 2e-151 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10041397 [exp] 398 / 7e-141 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10028273 [exp] 363 / 1e-126 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 349 / 3e-121 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222700 [exp] 461 / 2e-165 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.008G039600 [exp] 461 / 2e-165 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.009G013900 [exp] 456 / 3e-163 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 452 / 6e-162 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 452 / 8e-162 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 443 / 2e-158 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 427 / 4e-152 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 424 / 6e-151 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.005G109300 [exp] 373 / 9e-131 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.016G113300 [exp] 371 / 5e-130 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10040399 pacid=23173866 polypeptide=Lus10040399 locus=Lus10040399.g ID=Lus10040399.BGIv1.0 annot-version=v1.0 ATGACGAAAGAGGTAGTGGGCCAGGACGCGTCCTTCTCGGCAAAGGACTACCACGACCCACCGCCGGCACCGCTGATAGACGCGGCGGAGCTGGGCAAGT GGTCCTTCTACAGAGCACTCATCGCCGAGTTCATCGCCACCTTGCTCTTCCTCTATATCACCGTCCTCACCGTCATCGGCTACAAGGCCCAGTCCGACCC GCTCAACAGCAAAGGCGACCCCTGCGCCGGCGTCGGAATCCTCGGCATCGCCTGGGCTTTCGGCGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGC ATCTCCGTTGAGGGGTTGTATGAATTAATGTGGTCGCCGGCTGTGACAGGGGGTCACATTAACCCGGCGGTGACGTTCGGTCTGTTGCTGGCGAGAAAGG TGTCGTTAATAAGGGCGGTGATGTACATGGTGGCGCAATGCTTGGGGGCAATTTGCGGGGTTGGCTTAGTGAAGGCGTTTCAGAGCTCATACTATACCAG GTACGGCGGCGGAGCCAACTCACTCAACGACGGCTACAGCACCGGCACCGGCTTAGGAGCTGAGATCATCGGAACCTTTGTTTTGGTGTATACCGTTTTC TCCGCCACCGACCCCAAGAGAAGCGCTCGCGACTCCCACGTCCCCGTTCTTGCACCACTCCCTATCGGGTTTGCTGTTTTCATGGTGCATTTGGCCACCA TTCCCATCACTGGCACCGGCATCAACCCGGCCAGGAGTTTCGGCGCTGCCGTGATCTTCAACCACGAGAAATCCTGGGACGACCATTGGATTTTCTGGGT GGGACCATTCATCGGAGCGGCAGGGGCGGCGTTCTTCTACCAGTCGATATTGAGAGCGGGTGCTGCTAAGGCTATTGCGTCTTTCAGGAGCCACCACACC TCATCAGGTCCCGCCGTGTAG
AA sequence Show only first row Show all	>Lus10040399 pacid=23173866 polypeptide=Lus10040399 locus=Lus10040399.g ID=Lus10040399.BGIv1.0 annot-version=v1.0 MTKEVVGQDASFSAKDYHDPPPAPLIDAAELGKWSFYRALIAEFIATLLFLYITVLTVIGYKAQSDPLNSKGDPCAGVGILGIAWAFGGMIFVLVYCTAG ISVEGLYELMWSPAVTGGHINPAVTFGLLLARKVSLIRAVMYMVAQCLGAICGVGLVKAFQSSYYTRYGGGANSLNDGYSTGTGLGAEIIGTFVLVYTVF SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNHEKSWDDHWIFWVGPFIGAAGAAFFYQSILRAGAAKAIASFRSHHT SSGPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	0	1
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	1.0	0.9264
AT5G38060			unknown protein		Lus10004070 [exp]	2.4	0.8776
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	2.8	0.9236
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	5.7	0.8631
AT1G76660			unknown protein		Lus10025171 [exp]	6.3	0.8747
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	7.1	0.8793
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	9.5	0.8411
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	10.8	0.8422
AT3G15110			unknown protein		Lus10009195 [exp]	13.4	0.8828
AT4G28740			unknown protein		Lus10011914 [exp]	13.6	0.8819

Compare expression of checked genes

Lus10040399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.