Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39000 383 / 3e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT4G28030 49 / 9e-07 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G16800 40 / 0.0008 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023517 [exp] 501 / 0 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 382 / 2e-134 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 362 / 6e-128 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10019975 [exp] 51 / 3e-07 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10041016 [exp] 50 / 5e-07 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013457 [exp] 50 / 8e-07 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10021995 [exp] 44 / 8e-05 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10042534 [exp] 42 / 0.0002 AT1G72030 179 / 3e-55 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039300 [exp] 408 / 2e-144 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 387 / 3e-137 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G176500 [exp] 51 / 3e-07 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G054600 [exp] 47 / 3e-06 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.019G050700 [exp] 46 / 9e-06 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G079900 [exp] 44 / 5e-05 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G134102 [exp] 40 / 0.0006 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134000 [exp] 40 / 0.0006 AT1G03650 240 / 2e-82 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10040401 pacid=23173913 polypeptide=Lus10040401 locus=Lus10040401.g ID=Lus10040401.BGIv1.0 annot-version=v1.0 ATGCCGCCACTTCCTTTGGGAATCTCGCTTCCTCCTCCCACTCTCACTCTCAACACCCACCATCATCACCATCATAACTTTCCTTCTTCTCCCAGGATTC CTCCGATTTCCCTTCATCCTTTCCCCAAATCAGGAACATGTAGAGCAAGTCAAGTGGTGGACTTGTTCCCAACTCTGTCGCCAGAGATTGTGGTGAGGGA AGCAAGGATAGAGGACTGTTGGGAAGTGGCCGAGACTCACTGTAGTTCCTTCTTCCCCGGATATTCCTTCCCTCTGGATTTCGTGCTCAGAATGGATCGG ATAGTTGGACTGCTAGTCGGATTCTCGTTACCCGCTGGTTGTAACCGGACATGCCTGGTTGCTGTTGTTGGTAGTTCGGCTGATCAATCGCTCTACATTG GCAGTGGGGATATCAAGATCGGAGGGTTCGATGCCAAGTTTACTCTGAACAAGGGTTATGTAGCCGGGATATTGACCGTGGATACTGTTGCTGATTTCCT TCCGAGGAAAGGTCCACTGCGACAACGAAGGACTGGAATTGCGTACATATCAAACGTAGCTGTCCGAGACAGGTTTCGACGGAAGGGGGTAGGGAAGAGA CTGGTAGCAAAGGCTGAGGCACTGGCCAAGACATGGGGATGCCGCGCCATTGCTTTGCACTGCGATCTGCAGAATCCAGGTGCCACGAAACTGTACAGAG GGCAAGGGTTCAAGTGCATCAAGGTGCCTGAGGGTGCAAACTGGCCTCAACCCAGAACATCACCTGATATCAATTTCAACTTCATGATGAAGCTGCTGAA CTCAAACACAGCTCGTGCTTAG
AA sequence Show only first row Show all	>Lus10040401 pacid=23173913 polypeptide=Lus10040401 locus=Lus10040401.g ID=Lus10040401.BGIv1.0 annot-version=v1.0 MPPLPLGISLPPPTLTLNTHHHHHHNFPSSPRIPPISLHPFPKSGTCRASQVVDLFPTLSPEIVVREARIEDCWEVAETHCSSFFPGYSFPLDFVLRMDR IVGLLVGFSLPAGCNRTCLVAVVGSSADQSLYIGSGDIKIGGFDAKFTLNKGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVRDRFRRKGVGKR LVAKAEALAKTWGCRAIALHCDLQNPGATKLYRGQGFKCIKVPEGANWPQPRTSPDINFNFMMKLLNSNTARA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10040401 [exp]	0	1
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	2.2	0.9215
AT5G48340			unknown protein		Lus10041085 [exp]	8.7	0.9114
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	9.2	0.8993
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	10.9	0.8984
					Lus10022017 [exp]	11.5	0.9067
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	14.0	0.8816
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10016358 [exp]	14.0	0.8608
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	15.9	0.8956
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	18.6	0.9015
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	20.2	0.8856

Compare expression of checked genes

Lus10040401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.