Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17530 724 / 0 phosphoglucosamine mutase family protein (.1.2.3) AT1G70820 278 / 3e-85 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023518 [exp] 941 / 0 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10015835 [exp] 270 / 2e-82 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10009327 [exp] 121 / 3e-30 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10020414 [exp] 114 / 3e-28 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223000 [exp] 796 / 0 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G039200 [exp] 784 / 0 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G131400 [exp] 275 / 3e-84 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
Representative CDS sequence Show only first row Show all	>Lus10040402 pacid=23174101 polypeptide=Lus10040402 locus=Lus10040402.g ID=Lus10040402.BGIv1.0 annot-version=v1.0 ATGTCAGCGAAGGTTATGCAAAATGTTTTTGTAGCTCAGAATAAACAGATAGCACCCCGATACCAAAGGGGCAGTTCTGTCCCTAATACCTTCAAATCGC TTCCTTTCCGTGGAGGGAAGTTGGCATGGAATTGCATTTCCTCCATGCACATGCACACACGGTCAAGAGTCCAACGGTTGCGTATTTTGTGCAATGCTGC TGCTTCGCCTACTGCAGTTCCTTCGTTGGACAAAGCAGACTTTATGAAACTCCAAAATGGCAGTGACATTCGAGGTGTAGCTGTTCCTGGTGTGGAGGGG GAACCTGTTAATCTCACAGAATCAGTTACTGAAGCAATAGCTGCTGCATTTGCTGCATGGTTATCTGAGAAGAAAAATACTGATGCATCCAAACCCTTTA AAGTCTCCGTTGGTCATGATTCCCGTGTATCAGCCAAGAAATTGCAGGATGCAGTTTCTCGAGGAATCGCTGGTGCGGGCTTGGATGCTGATGTCTTTAC TGATTGTGAATGCATTGGTACTCAGTCTTCCATTTTACTAATTGGCTTCTATTCTGGTCGTAACATGGTGACCGTTGATTTTAGATTGGCATCTACACCA GCAATGTTTAATAGTACACTCACGGAAGACGAAGCATTCTTCTGTCCAGCAGATGGAGCTATAATGATTACAGCTAGTCATCTTCCTTTCAACAGGAACG GATTCAAATTTTTCACAAACACTGGAGGGCTTGGGAAAGCTGACATCAAAGACATTTTGAACCGAGCTGCAGACATATATAATAAGTTTACCAACGAAAG TTTGTCAAACTCAAAGAAAAGAGCTTCCGAGTCCGTGAAGACAGTCGATTACATGGCTGTGTATACCTCTGACCTCGTGAAGGCCGTTCGCAAAGCTGCC GGGAACATAGAGAAGCCGTTAGAGGGATTCCATATTGTTGTTGATGCTGGAAATGGTGCTGGCGGATTCTTTGCTGCAAAAGTTCTTGAGCCTCTTGGAG CAATTACTTCCGGAAGTCAGTTCTTAGAGCCAGATGGCATGTTCCCCAACCATATTCCCAACCCAGAGGATAAGACAGCAATGAAGGCCATAACTAAAGC AGTCGTTGATAACAAAGCTGATCTCGGTATCATCTTCGACACAGACGTTGATAGGTCTGCTGCTGTGGACTCTAGTGGACGGGAATTCAACCGCAATCGT CTAATCGCACTGATGTCTGCGATTGTTCTGGAGGAGCATCCAGGAACAACGATTGTTACGGACAGTGTAACTTCAGATGGGTTGACTACATTTATTGAAA AGAAACTTGGGGGGAAGCATCATCGGTTCAAACGAGGCTATAAAAATGTCATTGATGAAGGCATCCGTTTGGTAACTACACTCTCTTCCATCTTTTATGC TAAATTTACAACACTGAGCCAAAGTTTTGAAGGATTAGATGAACCTGGAATTGCAGTGGAACTAAGACTGAAAATCGATCAGAATCATCCAGATCTCAAA GGAGGATCATTCCGGGAGTATGGCGAGGCAGTTCTCAAGCACTTGGAAAACTTCGTAGCTTCTGACTCCAAACTTGAGAAAGCTCCGGTTAACTATGAAG GACTCCGAGTTTCCGGTTATGGTGGATGGTTCCTTCTCAGGCTCTCTCTTCATGATCCTGTTCTTCCTCTCAACATTGAGGCACCGGGCCACGATGATGC CATCAAACTGGGACTTGCCGTGGCTTCTGCTGTGAAGGAGTTCCCAGCTCTGGACACATCTGTACTGGACAAGTTTCTCCAATCGTCGTAA
AA sequence Show only first row Show all	>Lus10040402 pacid=23174101 polypeptide=Lus10040402 locus=Lus10040402.g ID=Lus10040402.BGIv1.0 annot-version=v1.0 MSAKVMQNVFVAQNKQIAPRYQRGSSVPNTFKSLPFRGGKLAWNCISSMHMHTRSRVQRLRILCNAAASPTAVPSLDKADFMKLQNGSDIRGVAVPGVEG EPVNLTESVTEAIAAAFAAWLSEKKNTDASKPFKVSVGHDSRVSAKKLQDAVSRGIAGAGLDADVFTDCECIGTQSSILLIGFYSGRNMVTVDFRLASTP AMFNSTLTEDEAFFCPADGAIMITASHLPFNRNGFKFFTNTGGLGKADIKDILNRAADIYNKFTNESLSNSKKRASESVKTVDYMAVYTSDLVKAVRKAA GNIEKPLEGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGMFPNHIPNPEDKTAMKAITKAVVDNKADLGIIFDTDVDRSAAVDSSGREFNRNR LIALMSAIVLEEHPGTTIVTDSVTSDGLTTFIEKKLGGKHHRFKRGYKNVIDEGIRLVTTLSSIFYAKFTTLSQSFEGLDEPGIAVELRLKIDQNHPDLK GGSFREYGEAVLKHLENFVASDSKLEKAPVNYEGLRVSGYGGWFLLRLSLHDPVLPLNIEAPGHDDAIKLGLAVASAVKEFPALDTSVLDKFLQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17530			phosphoglucosamine mutase fami...		Lus10040402 [exp]	0	1
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002902 [exp]	34.2	0.6176
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	78.2	0.6103
AT3G50790			esterase/lipase/thioesterase f...		Lus10017327 [exp]	143.0	0.5435

Compare expression of checked genes

Lus10040402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.