Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 602 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 515 / 1e-175 ARF ARF10 auxin response factor 10 (.1) AT1G77850 357 / 2e-115 ARF ARF17 auxin response factor 17 (.1) AT1G19220 261 / 9e-76 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 262 / 1e-75 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19850 259 / 1e-75 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G37020 255 / 5e-75 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 249 / 9e-72 ARF ARF6 auxin response factor 6 (.1.2) AT5G62000 248 / 1e-71 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 239 / 3e-70 ARF ARF1 auxin response factor 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023519 [exp] 1116 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10026510 [exp] 596 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 555 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 515 / 3e-176 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 355 / 1e-114 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 352 / 9e-114 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 351 / 5e-113 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10016091 [exp] 305 / 2e-99 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10010969 [exp] 253 / 4e-74 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223200 [exp] 736 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 718 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 603 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.016G090300 [exp] 595 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.009G014800 [exp] 590 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.006G127500 [exp] 589 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 389 / 5e-128 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 363 / 5e-118 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.006G138500 [exp] 265 / 1e-76 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G207700 [exp] 260 / 7e-76 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10040403 pacid=23174080 polypeptide=Lus10040403 locus=Lus10040403.g ID=Lus10040403.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTGGATTCACAGTTCTGGCACGCCTGCGCCGGCGGCATGGTCCAAATCCCTCCGGTGAGCTCGAAAGTTTATTACTTTCCTCAAGGCCACG CCGAGCATGCTCAATTGACCGCCGATTTCGCTCCTCCTAGCTGCCAGATTCCTTCAATGGTGCCTTGCAAAGTCTCCGCCATTAACTACATGGCAGATCC TGAAACGGATGAGGTATTTGCTAAAATCAGTCTTATCCCATTAATAAGTGGTTCTAGGGATGATAATAGTAGTGATGATGGGTTGTTTGAGTCTTCTCAA GAAGAAAAGACTGCATCTTTCGCTAAGCAACTCACTCAATCTGATGCCAATAACGGCGGCGGATTCTCAGTGCCTAGATACTGTGCTGAGACCATATTCC CAAGGCTGGATTACAACGCTGAGCCTCCTGTCCAGACCATACTCGCTAAAGATGTCCATGGCCAGACTTGGAAGTTCAGGCATATCTATAGAGGGACTCC TCGTAGGCATTTGTTGACAACTGGCTGGAGCAATTTCGTGAACCAGAAGAAGCTCGTGGCCGGGGATTCGATCGTGTTCCTCCGAGCTGACAATGGCGAT CTTTGTGTTGGGATCAGGCGTGCCAGAAGAAGTGAGTTTGCTCCGTCTGGGTGGAATTCATATGGCTTTATGAGGGAGGATTATGAGTGTAGGAAGAATG TTGTTAGTAATGGGGGTGATGTGACGATGAAGGCGAAAATTAGGTCGGAATCGGTTGTGGAGGCTGCAACTCTTGCTGCCAAAGGACGTCCCTTTGAGGT TGTTTACTATCCGAGTGCTGGCACTCCTGAGTATTGGGTTAGAGCTTCTGCTGTTAGAGCTGCAATGCAGATGCAGTGGTATCCCGGGATGCGGTTTAAG ATGCCGTTCGAGACTGAGGATTCTTCTAGGATTAGCTGCTTTATGGGAACCATATCTTCTGTTCAAGTTGCTGATCCAATCCACTGGCCGAATTCTCCGT GGCGCCTTCTACAGGTAGAATGGGACGAACCGGAGTTGCTTCACAACGTGAAGCGTGTCAACCCATGGTTGGTTGAATTAGTCTCGAGCATGCCGGCCAT TCACATCCCGCCTTTCTCGCCGCCAAGAAAGAAGCTGAGGTTTCCACAGGAACCGGATTTCTCCTTGATGAGTCAACTACCTCTTCCACCGTTCACCGGG AACTCGCTCAGGTCAAACAACAGTCTTCTGTGTTGTGTTCCGAACACCAACATTCCTGCAGGTATACAGGGAGCCAGGCATACGCATCATTTCGATCTAT TACCTTCTTCGGATCTCCACTTCAACAAACTGCAGCAGCAGACCGGTCAACTGTTACCTTTTGGGTTTGCCCCGAAATTCACCATCCCGACGAACAACGT CGCAGCGAAGACCAACTGCGATGAGAATGTATCGTGCTTGCTGACGATCGGTAGCAGTAGCCCCAAGGAAAGCAGCGAAACGAAGAAGACGCCCCACATA TTCTTGTTCGGTCAGCTCATTGTACCGGATCATCACACTTCTTCTGGAAGCTGCTCTGGCGAGTCATCGAATGGGAACAGTACATCTGTTGGCAATGCAG AGAAGATTATGATCACAAACCTCTCTGAGGGTTCGAGCTCTTCAGTGTACCAGAACGGTCCGCTGGAAAATTCTTCGGATGCAGGGTCCCCACGGTACAA ACATCTTACCATAACCAATGATGCAGGGCGGAAACTTGACCTGTCGATGATGGGATCGTACAAGGAACTCAACGGGAAATTGGCCGACATGCTTGGCATG GAACGATCACGACACACCGGAGATGAGTCGTTCGGTTATAGATTCACTAATCGACATTCTTGA
AA sequence Show only first row Show all	>Lus10040403 pacid=23174080 polypeptide=Lus10040403 locus=Lus10040403.g ID=Lus10040403.BGIv1.0 annot-version=v1.0 MKCLDSQFWHACAGGMVQIPPVSSKVYYFPQGHAEHAQLTADFAPPSCQIPSMVPCKVSAINYMADPETDEVFAKISLIPLISGSRDDNSSDDGLFESSQ EEKTASFAKQLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRADNGD LCVGIRRARRSEFAPSGWNSYGFMREDYECRKNVVSNGGDVTMKAKIRSESVVEAATLAAKGRPFEVVYYPSAGTPEYWVRASAVRAAMQMQWYPGMRFK MPFETEDSSRISCFMGTISSVQVADPIHWPNSPWRLLQVEWDEPELLHNVKRVNPWLVELVSSMPAIHIPPFSPPRKKLRFPQEPDFSLMSQLPLPPFTG NSLRSNNSLLCCVPNTNIPAGIQGARHTHHFDLLPSSDLHFNKLQQQTGQLLPFGFAPKFTIPTNNVAAKTNCDENVSCLLTIGSSSPKESSETKKTPHI FLFGQLIVPDHHTSSGSCSGESSNGNSTSVGNAEKIMITNLSEGSSSSVYQNGPLENSSDAGSPRYKHLTITNDAGRKLDLSMMGSYKELNGKLADMLGM ERSRHTGDESFGYRFTNRHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10040403 [exp]	0	1
AT3G14760			unknown protein		Lus10042496 [exp]	7.1	0.7302
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	7.4	0.7618
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	18.7	0.7086
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	28.6	0.6938
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	31.2	0.7168
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	35.3	0.6782
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	35.7	0.7159
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	37.9	0.7011
AT1G51405			myosin-related (.1)		Lus10003186 [exp]	53.5	0.7010
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	53.5	0.6648

Compare expression of checked genes

Lus10040403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.